Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02725 ATGGCGGAAACGAAGGAAGAAAGTAAATCTAATGAAGAGAGTGTCAAATTGTTCGTAGGTCAAGTACCGAAACACATGACGGAAGATGAATTACTCACAATGTTCAAAGAATTTGCTTTGGTTGACGAAGTCAACATAATCAAAGACAAAGCTACTCGCGCTTCTCGAGGTTGTTGCTTCGTGATTTGTCCTTCTAGAGATGAAGCTGATAAGGCCGTTAATGCGTGTCACAATAAGAAAACGTTACCCGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGACGGCGAGTTGGAAAGATTAGAGCACAAACTCTTCATTGGCATGCTTCCAAAAAACGTTTCTGAAGTTGAAGTATCTGAACTTTTCTCCAACTACGGAACAATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGTAGGTTGTGCATTTTTGAAATATGAAACCAAAGAACAAGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAACACAAAATGGAGAGTTCAAGTGTTCCTTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCTCAGAAAGCACAGTCTCAAGCTTCTAATGTGATACATGCTGATTCTCAACATCCTTCATTGTTTGGAGCCATGCCTATGGGTTATGTTCCTCCATATAATGGTTATGGTTATCAGACTCCTGCAAGTTACGGATTAATGCCGTACCGCATGCCGCCGATGCAGAATCAACCCGGTTACCATAATATGATGTCTCATATAAACCAAGGAAATGCATTGCGGCCTGATCTTGTACCTAATATGAACCCGAGAAGTTATCACGCTCCCGCAAATTATGTTGGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCAATGGCATATCCTGCTGCTGGAATGATTAGTGCAAGGCCTATGAATAGTCCTCCTGGTTCTGTTTCACCTGGAAATAGCAACTCCGCTACTTCTTCAGTGTCTAGCAAAAATTCTGGTGGTCAGATTGAAGGACCACCTGGCGCCAATCTATTTATCTATCACATACCCCAAGAATTTGGAGATCAAGAGCTTGCAAATGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGACAAAGCAACCGGTGTCAGCAAATGTTTTGGGTTTGTAAGTTATGATTCTCCAGAAGCTGCGCAATCCGCCATTAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGAGACAACAAACCGGGTAAACCTTACTGA 1293 0.4161 MAETKEESKSNEESVKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSELFSNYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMESSSVPLVVKWADTEKERQARRAQKAQSQASNVIHADSQHPSLFGAMPMGYVPPYNGYGYQTPASYGLMPYRMPPMQNQPGYHNMMSHINQGNALRPDLVPNMNPRSYHAPANYVGSYPAVPGLQHPMAYPAAGMISARPMNSPPGSVSPGNSNSATSSVSSKNSGGQIEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKRDNKPGKPY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02725 430 CDD RRM3_CELF1-6 347 419 - -
Car03g02725 430 MobiDBLite consensus disorder prediction 311 338 - -
Car03g02725 430 Gene3D - 316 422 IPR012677 -
Car03g02725 430 SMART rrm1_1 16 92 IPR000504 GO:0003723
Car03g02725 430 SMART rrm1_1 346 419 IPR000504 GO:0003723
Car03g02725 430 SMART rrm1_1 104 180 IPR000504 GO:0003723
Car03g02725 430 Gene3D - 100 194 IPR012677 -
Car03g02725 430 Gene3D - 2 99 IPR012677 -
Car03g02725 430 CDD RRM1_2_CELF1-6_like 104 180 - -
Car03g02725 430 CDD RRM1_2_CELF1-6_like 16 92 - -
Car03g02725 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Car03g02725 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Car03g02725 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Car03g02725 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Car03g02725 430 PANTHER RNA BINDING PROTEIN 9 417 - -
Car03g02725 430 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Car03g02725 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 417 IPR000504 GO:0003723
Car03g02725 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Car03g02725 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Car03g02725 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Car03g02725 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 184 IPR000504 GO:0003723
Car03g02725 430 SUPERFAMILY RNA-binding domain, RBD 103 425 IPR035979 GO:0003676
Car03g02725 430 MobiDBLite consensus disorder prediction 312 338 - -
Car03g02725 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 423 IPR000504 GO:0003723
Car03g02725 430 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 9 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02725 Car-Chr3 72888372 72892374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02725 345 428 Eukaryotic Initiation Factors Gene Family AT4G34110 35.955 5.03e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02725 K13207 - gmx:100813239 721.85