Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02689 ATGGAAAGCAAGGTTGAAAATCACATGACATCAGCTGCGGCCTTTGTTGAAGGAGGCATTCAAGAATCTTGTGATGATGCTTGCAGCATATGCCTTGAAGAGTTTTGCAATAGTGACCCTTCAACTGTAACTATTTGCCGGCATGAGTTTCACCTACAATGTGTTCTTGAATGGTGTCAAAGAAGCTCTCAATGTCCTATGTGTTGGCGACCTATTAGCTTGAAGGATCCTACCAGTCAAGAATTGTTTGAGGCGGTAGAGCAAGAGAGGAAGTGGAGGGTCGCTCCATCAAGAAATGCTGCTATTTTTCATCACAATGCTCTTGGAGATTTTGGATTGCAACAACTACGCATGGCTATCAACGATGATGATTTTGAAGAGCGAATACTTCAACATTTAGCTGCTGCAGCATCAATGAGAAGAGCACACCCCATTGGTCGAAGGGAAAGGCAGCGAATTCAACCCTTTGCTCATGATCCAAGTGAAATTCCAATGGACAATCCATCTATTCCAGTAACATCTAATGGAGATGAACCATTGCAACAAACACCACGACTTCAAACTGAAAGTTCTTCAACTTCTGAGTCTACAATTACAGAAACAAATGATCAAGAAATTTACTCAAATGATAGACGCAATGTAGCCAATTCTTCACCAAAAGACCAAGATAGAGCAGGATCATCAGAATTCCACTCATTTACTGATACTTTGCGGTCCAGACTTAATTCCGTGTCAATGAGATATAAAGAGTCAATTTCAAAGGGTGCAAGGGGTTGGAAAGAGATGTTGTTCTCTCGAAGTTCTTCCATGTCAGAACTTGGTTCAGATTCGAGAAAAGATGTGAATCCTGAAATTGCTAGTGTATCTCGATTGATGGAATACGTTGAAGCTAGGGAAAATAATAGAGTTGTCGATACTTCTTTGTCCAATCATTTGGAGGATGGTTCCATGGCAGAGGCAAGCAACCATAACCGAAGCTAG 981 0.4139 MESKVENHMTSAAAFVEGGIQESCDDACSICLEEFCNSDPSTVTICRHEFHLQCVLEWCQRSSQCPMCWRPISLKDPTSQELFEAVEQERKWRVAPSRNAAIFHHNALGDFGLQQLRMAINDDDFEERILQHLAAAASMRRAHPIGRRERQRIQPFAHDPSEIPMDNPSIPVTSNGDEPLQQTPRLQTESSSTSESTITETNDQEIYSNDRRNVANSSPKDQDRAGSSEFHSFTDTLRSRLNSVSMRYKESISKGARGWKEMLFSRSSSMSELGSDSRKDVNPEIASVSRLMEYVEARENNRVVDTSLSNHLEDGSMAEASNHNRS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02689 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 181 324 - -
Car03g02689 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 3 153 - -
Car03g02689 326 MobiDBLite consensus disorder prediction 306 326 - -
Car03g02689 326 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 181 324 - -
Car03g02689 326 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 3 153 - -
Car03g02689 326 SMART ring_2 28 68 IPR001841 -
Car03g02689 326 MobiDBLite consensus disorder prediction 137 231 - -
Car03g02689 326 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Car03g02689 326 Pfam Ring finger domain 27 68 IPR001841 -
Car03g02689 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 107 IPR013083 -
Car03g02689 326 MobiDBLite consensus disorder prediction 142 156 - -
Car03g02689 326 MobiDBLite consensus disorder prediction 167 231 - -
Car03g02689 326 SUPERFAMILY RING/U-box 21 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02689 Car-Chr3 72609100 72612513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02689 25 70 C3H Transcription Factor Family AT5G15790 47.826 3.87e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02689 K19043 - gmx:100819110 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02689 03 72609100 72612513 Car03g02689 03 72609100 72612513 ECH