Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02677 ATGGCTATGCAAAGTGTTTATCTGAAAGAGAATGAAGGAATTGCACACAATTTTGTGGGGCAATTATCATCTGCTAATTCAGGAGCAGCACCTTGGTGGAGTAGTTTTGGATCTCAATCCCTTTATGGAGAGTCTGGTGGTTGTGGACAAATCAAATCCTTTTCATTGGAGCCACCTATCTCTGTTAACCAATTTGGTGCAACTAAGCAATTGGGTAGAGGAGCTGAACATTTGTTGGGGAAAGAGCATACCAATCACTTTACCATCTTTCCAGATGATTTTAAAATGTCAGCTGATGCACAAAAGCCTCATACAACCATATCACTGCAGTCATCATTCCCTGATACTGCGACTCGTTACGAGCTAGGATTTACTCAGCCTATGATCTGTACAAAATATCCTTATGCAGATCAATTTTATGGACTCATCTCAACTTATGGACCTCAAATTCCGGGGCGTGTAATGCTGCCACTTAACATGACATCTGATGATGGACCGATTTATGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCACGCGCCAAAGCGGTGCTTGGTCACAAATTGATTAAACGTCGTAAGCCCTACATGCATGAGTCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGCGGCGGTCGTTTCTTGAACACAAAGAAATCTGCAAATGGAGATGGTAAAAGTGGAAGTAAAGTGCATAAATTTGGTGGTCAACAATTGCAGTGCAGTGGTTCTCAGAGTTCTGAAGTCCTTGAATCTGATGTTGGAACTTTAAACTCTTCAAAAGAAACTAATGGTAGCAGTCCGAATATTTCCGGGTCAGAGGTGACAAGCTTGTATTCAAGGGGAAATTTTGATGGCTTTGCGGTCAATCACCTTGGATCTTCCGTCCACTCTCTGGCAGACATGATTGATGGTGGGCGTGGCGTTATCATGCCCACCAAATGGGTTACAGCAGCTGGCAACTGCTGTAACCTTAAAGCTTGA 1002 0.4371 MAMQSVYLKENEGIAHNFVGQLSSANSGAAPWWSSFGSQSLYGESGGCGQIKSFSLEPPISVNQFGATKQLGRGAEHLLGKEHTNHFTIFPDDFKMSADAQKPHTTISLQSSFPDTATRYELGFTQPMICTKYPYADQFYGLISTYGPQIPGRVMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLGHKLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTKKSANGDGKSGSKVHKFGGQQLQCSGSQSSEVLESDVGTLNSSKETNGSSPNISGSEVTSLYSRGNFDGFAVNHLGSSVHSLADMIDGGRGVIMPTKWVTAAGNCCNLKA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02677 333 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 4 332 - -
Car03g02677 333 SMART cbf3 162 223 IPR001289 GO:0003700|GO:0006355
Car03g02677 333 PRINTS CCAAT-binding transcription factor subunit B signature 166 188 IPR001289 GO:0003700|GO:0006355
Car03g02677 333 PRINTS CCAAT-binding transcription factor subunit B signature 197 220 IPR001289 GO:0003700|GO:0006355
Car03g02677 333 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 332 IPR001289 GO:0003700|GO:0006355
Car03g02677 333 Gene3D - 163 225 - -
Car03g02677 333 MobiDBLite consensus disorder prediction 239 279 - -
Car03g02677 333 ProSiteProfiles NF-YA/HAP2 family profile. 163 223 IPR001289 GO:0003700|GO:0006355
Car03g02677 333 MobiDBLite consensus disorder prediction 211 279 - -
Car03g02677 333 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 166 220 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02677 Car-Chr3 72514865 72519512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02677 32 332 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.570 3.12e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Car03g02677 CBFB_NFYA 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02677 K08064 - gmx:100527677 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02677 03 72514865 72519512 Car04g02093 04 27028848 27033487 PCT