Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02676 ATGGCTTCTGCAACATCTTCTATTTCCTCATCTATCTACAACAATAGAATCTACAACCTCTCATTCACCCATTCTTCCATTTCACTCACCACCACCAACTTCCCTCAAAGACCCATTTCCCATAAACCCTtcaatctcaacctcaactctcaaagtttcaatctTTGCCCTATCCCACTTCAAATTCTTCACCCCCCGTTCGCTTCCTTAGATGAATTCCAAGTTTCTCAACAAGagaactcagaatcagaaccacaaacagaaacaTTTGAAAAACCACAGCAAGAAGAAGAGCAGAAAGTAACAATCTCAGACGATGCTGGGAGACTCTATGTTGGAAACTTGCCATTTTCAATTACTTCTTCTCAGTTGGCTGAGATCTTTGCAGAAGCTGGTACTGTCGTGTCTGTTGAGATTGTGTATGATCGAGTCACTGACAGGAGCAGAGGATTTGCATTTGTTACAATGAAGAGTGTTGAAGAAGCTAAAGAAGCAATTCGAATGTTTGATGgttctCAAATTGGTGGTAGGAGTGCTAAGGTAAACTTTCCAGAAGTGCCCAAAGGAGGTGAAAGGTTGGTAATGGGGAAAAAAGTAAGGAGCGCCTACAAAGGCTTTGTTGATAGTCCTCACAAGATTTATGCTGGAAACCTTGGCTGGGGACTGAACTCTCAGGAACTTAGAGATGCCTTTGCTGAACAGCCAGGCTTATTGGGTGCCAAGGTCATTTATGAGAGGGACAATGGAAGATCTCGAGGTTTTGGATTCGTCACTTTTGAAACTGCCGAGAATTTAGAGGCTGCTTTGAACGCAATGAATGGCGTGGAAGTTCAAGGCCGGCCCTTGCGATTGAATTTGGCTTCAGAGAGGACAACCTCATCTCCTCCTCCGGTAGTTGAGGAAAATACAAAAAGCAATGTTGATAGCTCAGAATTGGTGTCTAGTGCCAGCACTTGA 957 0.4065 MASATSSISSSIYNNRIYNLSFTHSSISLTTTNFPQRPISHKPFNLNLNSQSFNLCPIPLQILHPPFASLDEFQVSQQENSESEPQTETFEKPQQEEEQKVTISDDAGRLYVGNLPFSITSSQLAEIFAEAGTVVSVEIVYDRVTDRSRGFAFVTMKSVEEAKEAIRMFDGSQIGGRSAKVNFPEVPKGGERLVMGKKVRSAYKGFVDSPHKIYAGNLGWGLNSQELRDAFAEQPGLLGAKVIYERDNGRSRGFGFVTFETAENLEAALNAMNGVEVQGRPLRLNLASERTTSSPPPVVEENTKSNVDSSELVSSAST 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02676 318 PANTHER OS02G0815200 PROTEIN 4 299 - -
Car03g02676 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Car03g02676 318 MobiDBLite consensus disorder prediction 85 99 - -
Car03g02676 318 Gene3D - 69 192 IPR012677 -
Car03g02676 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Car03g02676 318 CDD RRM_HP0827_like 109 185 - -
Car03g02676 318 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 4 299 - -
Car03g02676 318 MobiDBLite consensus disorder prediction 75 99 - -
Car03g02676 318 SMART rrm1_1 109 182 IPR000504 GO:0003723
Car03g02676 318 SMART rrm1_1 212 285 IPR000504 GO:0003723
Car03g02676 318 MobiDBLite consensus disorder prediction 287 318 - -
Car03g02676 318 SUPERFAMILY RNA-binding domain, RBD 208 292 IPR035979 GO:0003676
Car03g02676 318 Gene3D - 196 295 IPR012677 -
Car03g02676 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 283 IPR000504 GO:0003723
Car03g02676 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Car03g02676 318 SUPERFAMILY RNA-binding domain, RBD 104 184 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02676 Car-Chr3 72511595 72514230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02676 95 290 Eukaryotic Initiation Factors Gene Family AT3G16380 33.500 7.49e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02676 - - gmx:100814852 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02676 03 72511595 72514230 Car04g02092 04 27025544 27028101 PCT