Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02674 ATGAACGATTTGCTATCCGCTGACAACAACCACCGCCACGTCATCCAGATGGCTGAGAACTCCACCGGCACGGCGATAAGCCTAGAAAAATTCTTCGAAGAAATTGAAGCGGTGAAAGAAGAATTGAACGAATTAGAAAAGCTCCACGTAAGGCTCCGAAAGTCGCACGAAAAAAGCAAAAGGCTTCACAGCGCAAAGGAAGTGAAAGAGCTTCGTTGTAGAATGGATTCTGACGTTAGTCTCTCTCTAAAGAAAGCGAAATTCGTGAAGGGTAGTTTGGAGTCACTTGAGCGGTCTAATGAAGCAAGCCGGGGTTTAAAGGATTGTGGACCGGGTTCGTCTTCTGATAGAACCCGGTCGGGTGTGGTGAGTGGGTTGAGGAAAAAATTGAAAGAGTCGATGGAAAGTTTTAATGAACTTAGAGAAGAAATATCGTTGGAGTATAGACAAACCGTGAAACGGAGATATTTTACTGTCACCGGAGAGAACCCTACTGATAAAACTGTTGACCTCCTCATCTCTACTGGTGAGAGCGAAACATTCTTAAAAAAGGCAATCGAAGAGCAAGGTAGAGCAACAGTAATGGAGACAATCCAAGAGATTGAGGAGAGGCATGGTGCAGTGAAAGAGATTGAGAGAAATCTAAAAGAGTTGCACCAAGTGTTTTTGGACATGGCTGTTTTGGTTGAAGCACAAGGTGAAGATTTGAATGACATTGAGAGCCAAATGATGAGAGCTAATTCTTATGTTACCAGTGGGGTTCAACAATTTCATGTTGCTAACACCCATCAAAAGAATACCCGTAAATGCACCTTTTTTGCCATGTTACTCCTCCTCATTATTGCTTTGGTTATTATTCTCCCTATTGTTTTTAAATAA 879 0.4232 MNDLLSADNNHRHVIQMAENSTGTAISLEKFFEEIEAVKEELNELEKLHVRLRKSHEKSKRLHSAKEVKELRCRMDSDVSLSLKKAKFVKGSLESLERSNEASRGLKDCGPGSSSDRTRSGVVSGLRKKLKESMESFNELREEISLEYRQTVKRRYFTVTGENPTDKTVDLLISTGESETFLKKAIEEQGRATVMETIQEIEERHGAVKEIERNLKELHQVFLDMAVLVEAQGEDLNDIESQMMRANSYVTSGVQQFHVANTHQKNTRKCTFFAMLLLLIIALVIILPIVFK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02674 292 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 198 260 IPR000727 -
Car03g02674 292 CDD SNARE_syntaxin1-like 197 256 - -
Car03g02674 292 Coils Coil 28 58 - -
Car03g02674 292 PANTHER SYNTAXIN-121 8 288 - -
Car03g02674 292 MobiDBLite consensus disorder prediction 100 124 - -
Car03g02674 292 ProSitePatterns Syntaxin / epimorphin family signature. 204 244 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car03g02674 292 Gene3D - 188 291 - -
Car03g02674 292 Gene3D - 26 158 - -
Car03g02674 292 CDD SynN 28 185 IPR006011 GO:0016020
Car03g02674 292 Pfam SNARE domain 236 286 IPR000727 -
Car03g02674 292 SUPERFAMILY t-snare proteins 27 253 IPR010989 GO:0016020|GO:0016192
Car03g02674 292 SMART SynN_4 23 149 IPR006011 GO:0016020
Car03g02674 292 Coils Coil 123 147 - -
Car03g02674 292 Pfam Syntaxin 30 233 IPR006011 GO:0016020
Car03g02674 292 PANTHER SYNTAXIN 8 288 IPR045242 -
Car03g02674 292 SMART tSNARE_6 193 260 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02674 Car-Chr3 72503132 72505089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02674 21 271 SNARE and Associated Proteins AT3G11820 63.745 1.87e-113 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02674 K08486 - gmx:100808718 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02674 03 72503132 72505089 Car03g02674 03 72503132 72505089 ECH
Car03g02674 03 72503132 72505089 Car04g02091 04 27022010 27024591 PCT