Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02672 ATGGATCAAGATCACGAGATTGAAGTTCCATCTTTCTTTGTCTGCCCAATATCATTAGAAATCATGAAGGATCCAGTCACTGTCTCCACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCAAAGAAAAACATTACATGTCCTGTTACAAAACAACAACTACAAGATTCAACTGATCTAACACCAAATCACACACTTCGAAGATTAATCCAAGCATGGTGTACATTAAATGCTTCACAAGGCATTGAAAGGATTCCAACTCcaaaaccaccaatcaacaaaacacaaatcacaaaactcaTCAATGAAGCTTCTTCTCATAATTCATCACCTCTCATGCAAATTAAATCCCTCAAAAGACTTCGATCCATTGCTTCTGGCAGTGAAACAAATAAACGCATCATGGAAGATGCAGGTGTTGTTGAATTCTTAGCATCGGTTGTAATAGACAACATTGATCACAATTCTGCATCTTTATTAACAGAGAATAACCCTGTTGATGAATCATTAAGCATACTTCATAATCTTCATGTTTCTGAATCTGGGTTGAAAACTCTGTTATGTTTCAGAAACGGTGAATTCATTGAATCATTAACAAAAGTTATGCAGAAGGGTTTCTTTGAATCAAGAGCTTATGCAGTATTTTTACTGAAATCTATGACAGAAGTTGCAGAACCAGTGCAGTTACTACATCAAAAAACAGAACTTTTTATGGAATTAGTGCAAGTTTTGAAGGATCAAATATCAATCAAAGTATCAAAAGCAACACTTCAAACTTTGATTGTGCTTTGTCCATGGGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTTCTGTTCTGATAGAACTTCTGTTAGATAACTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTGTTGGAGAATCTTTGTCAGTGTGCTGAAGGAAGAGCTGAACTTTTGAGACATGGAGCAGGGCTAGCTGTAGTATCGAAGAAGATTCTAAGGGTTTCGAGCGTGGCGAATGATCGAGGTGTGAGGATTCTGTTATCTGTTTCAAGGTTCTCTGCAACTCCAAATGTTGTTCAAGAAATGCTTAAACTTGGTGTTGTGGCTAAACTTTGTTTGGTTCTTCAAGTTGATTGTGGAAGTAAGACTAAAGAGAAAGCAAGTGAGATACTTAAGATGCATGCTAGGGTTTGGAGGAATTCTCCATGCATACCTAGTAATCTTCTTTCTTCATATCCCAATTATATATGA 1260 0.3571 MDQDHEIEVPSFFVCPISLEIMKDPVTVSTGITYDRESIEKWLFSKKNITCPVTKQQLQDSTDLTPNHTLRRLIQAWCTLNASQGIERIPTPKPPINKTQITKLINEASSHNSSPLMQIKSLKRLRSIASGSETNKRIMEDAGVVEFLASVVIDNIDHNSASLLTENNPVDESLSILHNLHVSESGLKTLLCFRNGEFIESLTKVMQKGFFESRAYAVFLLKSMTEVAEPVQLLHQKTELFMELVQVLKDQISIKVSKATLQTLIVLCPWGRNRIKGVEAGTVSVLIELLLDNCKDRKPNEMMLVLLENLCQCAEGRAELLRHGAGLAVVSKKILRVSSVANDRGVRILLSVSRFSATPNVVQEMLKLGVVAKLCLVLQVDCGSKTKEKASEILKMHARVWRNSPCIPSNLLSSYPNYI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02672 419 ProSiteProfiles U-box domain profile. 8 84 IPR003613 GO:0004842|GO:0016567
Car03g02672 419 SUPERFAMILY ARM repeat 97 397 IPR016024 -
Car03g02672 419 CDD RING-Ubox_PUB 13 56 IPR045210 -
Car03g02672 419 SMART Ubox_2 12 77 IPR003613 GO:0004842|GO:0016567
Car03g02672 419 Pfam U-box domain 9 79 IPR003613 GO:0004842|GO:0016567
Car03g02672 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 6 416 - -
Car03g02672 419 Gene3D - 89 407 IPR011989 -
Car03g02672 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Car03g02672 419 SUPERFAMILY RING/U-box 4 82 - -
Car03g02672 419 PANTHER WDSAM1 PROTEIN 6 416 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02672 Car-Chr3 72472552 72474131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02672 4 416 U-box Gene Family AT3G52450 59.725 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02672 - - gmx:100809123 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02672 03 72472552 72474131 Car03g02672 03 72472552 72474131 ECH
Car03g02672 03 72472552 72474131 Car04g02082 04 26661696 26663173 PCT
Car04g02083 04 26707070 26708824 Car03g02672 03 72472552 72474131 PCT