Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02617 ATGCCCGGGACAAGACAGAAAGATGGACCCGGCCAAAATTCAGAGTCTTCAGGGGGGAACAATGAACCTGAAAAACCCACAGATTCTGGTGAGCAGGTAGACCTTGATGGGGACAATCaagaggagacaacggatgaagaggttgagtatgaagaagtagaggaggaagtagaagtggaagaggaagaggaggaagaggaagaagaggcagaggaagagAGTAAGCCATCAGATGGTGAAGGTGACATGAGAGTGGAAGATACTAAGGATGAGGCTGAGAAAAAGAAACACGCGGAGCTTCTTGCACTTCCACCTCATGGTTCAGAGGTTTACATTGGGGGAATTCCTCACGAAGTTTCTGAAAAAGATTTAAGGGCCTTTTGTCAATCTGTGGGAGAAGTGGCAGAGGTAAGGGTTATGAAGGGAAAAGATTCAAAAGGTTATGCTTTTGTGACCTTCAAAACAAAGGAATTGGCATCTAAGGCTCTTGAGGAGTTGAACAACTCTGAATTCAAGGGAAAAAGAATAAAGTGTTCACCATCTCAAGTCAAGCATAGGTTATTCATTGGTAATGTTCCTAAAGATTGGACTGTAGAAGATATGAAGAAGGTTGTTGCCGAGGTTGGCCCTGGAGTTACTTCTGTGGAACTGTTGAAGgatccacagagttctagccgtaatcggggattttcttttattgagtatcacaatcatgcttgtgcagattattcaaggcaaaagatgtcaaactcaaaatttaaactcgacaataatgctccaacagtaagctgggctgacccaaggaattctgattctgcatcttctcagGTCAAAGCAGTATATGTAAAGAACCTTCCAGAAAACATAACTCAGGATCAGCTGAAGGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGCCCTCCCTCCCGCTAAAGCTGGACAAGAAAAGAGCAGATACGGTTTTGTGCATTTTGCTGATAGGTCAAGTACAATGAAGGCTTTGAACAATACGGAGAAGTATGAAATTGATGGCCAGACTTTGGAATGCTCACTCGCCAAGCCACAGGCAGATCAGAAGCTATCCAGTGCATCAAATTCGCACAAGTCAGTTGTACTTCCCACTTACTCACCTCCTCTGGGCTATGGTATGGTTGGTGGTGGGTATGGTGCTGTTGGGGCAGGATATGCTGGTGCTGGCTTTGCACAGCCTCTGATGTTTGGTCCGGGAGCAACCCCTGCTGGCATGGCGATGATGCCAATGCTCTTACCAGACGGAAGGATTGGATATGTATTGCAACAACAAGGTTTACAGCAGCATGGTTTGCAACAGCACGGATTGCAGCAGCATGGTTTCCAGCAACGTGCTCCTTCACCAGTATCCCGAGATGGCAGGAGTGGTAGTGGTAGCTCAAGTGGTGGGAGACGCAGTAACGATAATACCCGTAATCGTGGGCATGGCCGATATAATCCCTACTAA 1482 0.3792 MPGTRQKDGPGQNSESSGGNNEPEKPTDSGEQVDLDGDNQEETTDEEVEYEEVEEEVEVEEEEEEEEEEAEEESKPSDGEGDMRVEDTKDEAEKKKHAELLALPPHGSEVYIGGIPHEVSEKDLRAFCQSVGEVAEVRVMKGKDSKGYAFVTFKTKELASKALEELNNSEFKGKRIKCSPSQVKHRLFIGNVPKDWTVEDMKKVVAEVGPGVTSVELLKDPQSSSRNRGFSFIEYHNHACADYSRQKMSNSKFKLDNNAPTVSWADPRNSDSASSQVKAVYVKNLPENITQDQLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSTMKALNNTEKYEIDGQTLECSLAKPQADQKLSSASNSHKSVVLPTYSPPLGYGMVGGGYGAVGAGYAGAGFAQPLMFGPGATPAGMAMMPMLLPDGRIGYVLQQQGLQQHGLQQHGLQQHGFQQRAPSPVSRDGRSGSGSSSGGRRSNDNTRNRGHGRYNPY 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02617 493 MobiDBLite consensus disorder prediction 34 76 - -
Car03g02617 493 Gene3D - 186 266 IPR012677 -
Car03g02617 493 Coils Coil 43 74 - -
Car03g02617 493 MobiDBLite consensus disorder prediction 1 94 - -
Car03g02617 493 SUPERFAMILY RNA-binding domain, RBD 105 269 IPR035979 GO:0003676
Car03g02617 493 PANTHER GEO13361P1-RELATED 13 491 - -
Car03g02617 493 PANTHER - 13 491 - -
Car03g02617 493 Gene3D - 268 391 IPR012677 -
Car03g02617 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 267 IPR000504 GO:0003723
Car03g02617 493 MobiDBLite consensus disorder prediction 77 94 - -
Car03g02617 493 MobiDBLite consensus disorder prediction 442 493 - -
Car03g02617 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 183 IPR000504 GO:0003723
Car03g02617 493 MobiDBLite consensus disorder prediction 442 479 - -
Car03g02617 493 Gene3D - 29 185 IPR012677 -
Car03g02617 493 MobiDBLite consensus disorder prediction 7 26 - -
Car03g02617 493 SMART rrm2_1 109 179 IPR003954 GO:0003676
Car03g02617 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 254 IPR000504 GO:0003723
Car03g02617 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 349 IPR000504 GO:0003723
Car03g02617 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 177 IPR000504 GO:0003723
Car03g02617 493 SUPERFAMILY RNA-binding domain, RBD 270 360 IPR035979 GO:0003676
Car03g02617 493 SMART rrm1_1 109 179 IPR000504 GO:0003723
Car03g02617 493 SMART rrm1_1 279 352 IPR000504 GO:0003723
Car03g02617 493 SMART rrm1_1 186 263 IPR000504 GO:0003723
Car03g02617 493 CDD RRM_SF 110 179 - -
Car03g02617 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 356 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02617 Car-Chr3 72013070 72017452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02617 110 423 Eukaryotic Initiation Factors Gene Family AT4G34110 24.722 5.63e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02617 K13161 - gmx:100798476 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02617 03 72013070 72017452 Car03g02617 03 72013070 72017452 ECH