Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02576 ATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGGACCTCCAGATAATTGAGAAGGAGCTCGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCTACACTTAGAAGTGATTCTCAGAGTCAACGCCCACCTCATAGCATCCATGTTAATCCCAAATATTTAGAAAGACAACGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTATTTAATGATATGACTGGATCTATTTCAAACACAAATGAGGACTCAGAGAGGCCAGATAGAGCTTTGGGTGCTGCACGACCATGGCTGGATCCTAGGGTTAACATAAATAATAATCAGCATACTCAAAGAGATGTATTTCATGATTCTGTTCCTGAAAAGAGCATTGGTGGAGCCTATGGAGACGATGAATATAATTCTACTGTTTCAAGTAATTTGGGCTCAGGTGTTGGAAGAACTGGAAGTAGACTCATTGGCGGTGTTGCAGAGACCGTATCCGGGCAAAGAAATGGTTTCAGCCTCAAACATAGTTTTTCAAGTCATGCAGCACCGAAGTCTATGAATTTGAATGCACATCATCAGCCAACACAAACCATAACTAACGTAAGGAGCAGTGCAATGTCAAGTAACTGGAAAAATTCAGAGGAAGAGGAGTTCATGTGGGATGAGATGAACTCTAGTTTGCCCGATCATGTACCCAATGTCTCTAGCAACTTGAGCACCGACCCGTGGATGGCCGATGACGACAATTTGGAAAGTGAAGATCAGCTCCAAATCACACACCCAATTGGAACAAAGGTTAATAGAAAAATGTCCACTGTTAAGAAACAACTACCGTCATCTGGGGGTCATTCATCATTATCATGGGAGTTGCAGAAGCAGCTCCCAAGTGACAAATTGAATATGAAGTCGGGTCACTCAGAATTATTTGTTTCCGCTCCAAGTAGCTTACCCAAGAATTCGAATGCGTTGGCTGGGAGGATGAGGAATCAGTCTTTTATACCGCATACAACTATAGGAATGGGCAAAATTGTGGGACAGCAGCAGTTTGATTCTGAGGGGGTCGAATCCCCTTCTGCACAGTCACCTCTGCGACAACAGTCTCCATCGGTGCCAGTAACCACACAACTCCCTCATTCAATGCAAAATTTGGCTGAGCAAGATTGTCCACCAACTCTTAAAACATCTCAACATTTGGGTGGTCTGCAAAGTCAAAATATTAGAGATCCCGCACCTGCCTTCCGTCCCAATGTTCAGGTTGGTAACTTGCGAAAATCACAGGAAAAGGACATGCGGGGTCCACCATCTTCTGTAACTACTTTTCAGCCAAGACCTCAGCAACAGCAGGCGGTGCCTTCACAGGCTGACATTAGTCTTAAAGCTAAGCAGCCACCCAAGTCTAAAGTTTCTTTAGCAAAAGAAACTTCCGAAAAGTCAACCTCAAAGAGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATCCCCAAAAAATCAATTACTAGAAGTCTGGATGCAAGTAGCCGTCCATCTCAACAAGCGGCTAAGCCTACTCGGTTAGGTGCTCCTTCCCCTACCACATTAATTTCTTCGGGGGCTTCTGCTATGTCACTATCTTCAGTCGGTCCTCCAAATGATTATTCAGCTACTCTGCCAAAACTACCTAAAGGGAAGGCTGGAAAGCGGCAAAGAGATTCTACTCAACCATCTGCTTCCTCTAAGGATTGCAGTGCATCAACTCCGAGCTCAAATGCCACTAATAAGAATACCTTGAATCCAATTTCAATTTTTTTAAGCTCATTAGTTGCTAAAGGTTTGATATCAGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAAGACCAAACTGAAAGCATTATTGTCAGTTCCACTTTGCCAGTTGCTTCAGTTCCTGTTTCTGCAGCTGTCCCTGTACCGTCTTCCAGAGATGGGGTAGATGATGCTGCAAAAGCCTCACTTGCCTTGTCCAAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTGATTTTAAACCTGATGTAATTCGAGAAATGCATCCAGATGTAATCACTGAATTATTGGATGAACTCCCACATCATTGCAGTAATTGTGGTATTAGGCTTAAACAGCAAGAACAGTTAGATAGGCACTTGGAGTGGCATGCTACAAAAGAAAGAGAACAAAATGGTCTGATTACGGCATCAAGAAGATGGTATGCAAAGTCAAATGACTGGATTGCTGGCAAGGCCGAATATCTGTCTGAGTCCGAAATTGCTGATTCCATGGATGCATATGATGAAAAAACAGATGAGAGTCAATTGGATTCCATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAGTTATTTGAAGATGTGTACTGTCAGGTAAGTGACCAGTGGATGTTCAAGGAGGCTGTTTACTTGAACAACTCAGATAGCAATGACGAGATTGAAAGTAGAAATGTGGGCCCCATCATTCATGTTCGATGCTTATCGGAAAACTTAATGTCGAGTGCGACCAATACAGAACTTGATTAA 2556 0.4292 MRHLFGTWRGVFPPQDLQIIEKELGFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVFNDMTGSISNTNEDSERPDRALGAARPWLDPRVNINNNQHTQRDVFHDSVPEKSIGGAYGDDEYNSTVSSNLGSGVGRTGSRLIGGVAETVSGQRNGFSLKHSFSSHAAPKSMNLNAHHQPTQTITNVRSSAMSSNWKNSEEEEFMWDEMNSSLPDHVPNVSSNLSTDPWMADDDNLESEDQLQITHPIGTKVNRKMSTVKKQLPSSGGHSSLSWELQKQLPSDKLNMKSGHSELFVSAPSSLPKNSNALAGRMRNQSFIPHTTIGMGKIVGQQQFDSEGVESPSAQSPLRQQSPSVPVTTQLPHSMQNLAEQDCPPTLKTSQHLGGLQSQNIRDPAPAFRPNVQVGNLRKSQEKDMRGPPSSVTTFQPRPQQQQAVPSQADISLKAKQPPKSKVSLAKETSEKSTSKSLPAPSVKSGIIPKKSITRSLDASSRPSQQAAKPTRLGAPSPTTLISSGASAMSLSSVGPPNDYSATLPKLPKGKAGKRQRDSTQPSASSKDCSASTPSSNATNKNTLNPISIFLSSLVAKGLISAXXXXXXXXXXXEDQTESIIVSSTLPVASVPVSAAVPVPSSRDGVDDAAKASLALSKSTSTEIRNLIGFDFKPDVIREMHPDVITELLDELPHHCSNCGIRLKQQEQLDRHLEWHATKEREQNGLITASRRWYAKSNDWIAGKAEYLSESEIADSMDAYDEKTDESQLDSMVVADENQCLCVLCGELFEDVYCQVSDQWMFKEAVYLNNSDSNDEIESRNVGPIIHVRCLSENLMSSATNTELD 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02576 851 MobiDBLite consensus disorder prediction 563 584 - -
Car03g02576 851 MobiDBLite consensus disorder prediction 226 292 - -
Car03g02576 851 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 848 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Car03g02576 851 ProSitePatterns Zinc finger C2H2 type domain signature. 702 722 IPR013087 -
Car03g02576 851 MobiDBLite consensus disorder prediction 500 545 - -
Car03g02576 851 MobiDBLite consensus disorder prediction 35 100 - -
Car03g02576 851 MobiDBLite consensus disorder prediction 229 244 - -
Car03g02576 851 ProSiteProfiles Zinc finger C2H2 type domain profile. 700 727 IPR013087 -
Car03g02576 851 MobiDBLite consensus disorder prediction 61 86 - -
Car03g02576 851 MobiDBLite consensus disorder prediction 256 292 - -
Car03g02576 851 MobiDBLite consensus disorder prediction 344 404 - -
Car03g02576 851 MobiDBLite consensus disorder prediction 432 456 - -
Car03g02576 851 MobiDBLite consensus disorder prediction 344 584 - -
Car03g02576 851 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 848 - -
Car03g02576 851 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02576 Car-Chr3 71593921 71600585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02576 674 839 C2H2 Transcription Factor Family AT4G04885 35.882 1.05e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car03g02576 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02576 K14400 - gmx:100788958 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02576 03 71593921 71600585 Car03g02576 03 71593921 71600585 ECH