Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02575 ATGATCAGTCTAAGATGCCAAAACAGTGATAACCTAACTAGAATTATTGAATTAATTAATATTGGATTGGATGTTTATTTGCAATCCTTTTCAGGTGTTGAGGTAAAACGTGGAGAATCGCTCAAGGTTGATCCAGGAGATGACAAGCTTGTCCACCTTTCAACGGCATGTCTTGGGGATGTCCGCAAGGATAAAGGTAGTGAACCAGTATCCCTGTATGTGAAGATCGGTGACCAGAAGCTTGTTCTTGGAACACTTTCTTCAGAAAAATTTCCTCAGATATCTTATGATTTGATATTTGAGAAGGAATTTGAGCTATCACATAACTGGAAATTTGGGAGTGTCTTCTTTACTGGATTTAAAGTAGAATCTGAGCTGGTTTCTGATGACGATGAAGATTCTGATAATTTTGATGGTGAAGATATTCCAATTAATGCTGCCAATGGGAAACCTGAGAACGGGTTGAAGAGTGGTGCCAAACCTGATGTAATCGAAGCTAATGAAAAGAAGACATCAGATCCAAAACAGAATGAGAATGGTGCTAGTGGTAAAGATGAAGAGTCATCTGAATTTGACACTGACGAGGATTCCAGTGAAGACGAGCCCATGGCAAATGGTCtgatagaaagtagtgaagatgacgacgatagcgacgaggatgatgaagaggatgatgatgaggaaacaccgaagaagATTGAAGGGAGCAATAAGAGGGTTTTTGATTCTTCCAAGAAAACACCTGTACCTGTGAAGAGGGCAAAATTTGTTACTCCTGAGAAGACTGGTGTGAAGAATGGTGGCCATGTTGATACTCCACACCCTTCTAAGCACGCTAGTAAAGCAGCTGCAAACAATAATAAGCAGCCAGTGAAGCAGCAGACTCCAAAGTCAAATGGGGATTACAGCTGCAAGCCCTGCAACAGGTCATTTAAGACCGAAGATGCCTTAGGTTCTCATAATAAGGCCAAGCACAGTGCCAAGTGA 987 0.3799 MISLRCQNSDNLTRIIELINIGLDVYLQSFSGVEVKRGESLKVDPGDDKLVHLSTACLGDVRKDKGSEPVSLYVKIGDQKLVLGTLSSEKFPQISYDLIFEKEFELSHNWKFGSVFFTGFKVESELVSDDDEDSDNFDGEDIPINAANGKPENGLKSGAKPDVIEANEKKTSDPKQNENGASGKDEESSEFDTDEDSSEDEPMANGLIESSEDDDDSDEDDEEDDDEETPKKIEGSNKRVFDSSKKTPVPVKRAKFVTPEKTGVKNGGHVDTPHPSKHASKAAANNNKQPVKQQTPKSNGDYSCKPCNRSFKTEDALGSHNKAKHSAK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02575 328 MobiDBLite consensus disorder prediction 279 306 - -
Car03g02575 328 Pfam C2H2-type zinc finger 302 326 - -
Car03g02575 328 ProSitePatterns Zinc finger C2H2 type domain signature. 304 325 IPR013087 -
Car03g02575 328 MobiDBLite consensus disorder prediction 129 328 - -
Car03g02575 328 MobiDBLite consensus disorder prediction 230 249 - -
Car03g02575 328 MobiDBLite consensus disorder prediction 188 229 - -
Car03g02575 328 MobiDBLite consensus disorder prediction 162 187 - -
Car03g02575 328 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 30 324 - -
Car03g02575 328 Gene3D Nucleoplasmin core domain 24 126 - -
Car03g02575 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 302 328 IPR013087 -
Car03g02575 328 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 30 324 - -
Car03g02575 328 Pfam Nucleoplasmin-like domain 32 120 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02575 Car-Chr3 71585388 71590782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02575 30 327 C2H2 Transcription Factor Family AT5G03740 40.461 5.36e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car03g02575 NPL 1.6e-07 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02575 - - gmx:100812152 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02575 03 71585388 71590782 Car03g02575 03 71585388 71590782 ECH