Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02562 ATGGATTGGAATGAGAGCTCAAGACCCTTCATTCCTCTTCCGGAATCTTCCTTAAGCTTCTTCTACAACTATAACAACAACCCTTCTTATTCAGGAATGGAAGTGAGTCAAGCATCATTGGGTGATCAAACACAACAAATGTTTCCAGCAATGGATGAAATGAACATTAATGGAAATAATAACCGAGAGAAGAAGAAGAGATTAACAAATAACCAGATTGAGTTACTAGAAAGGAGTTTCCAAGAGGAAATAAAGTTAGACCCTGAAAGAAAGATGAAGCTATCAAGAGAGTTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTTCAAAATAGGCGTACTAGGTGGAAGGCTAAGCAACTTGAGCATTTGTATGATGAGCTTAAACATGAATTTGACGTCATCTCTAAGGAAAAGCAGATTCTTCAAGAAGAGGTTTTAAAGTTGAAAGGAAAGCTAAAAGAGCAATGTAATTTTAGGACACAAACACAAACATTTGGTGGGTATAAAGAAATGTCAAATGAAGAAACAGTTGAAAGTACATCAGAAGGGATGAAATGTTCAAACAGACCACAAGGAATTACAAGTAGCAATATTCAACAAGTTGCTGCAGCAGAAGGATACAACAGTTCTTTCACTGTTGAAGATTTTAACTCAGTTTCAATGCCTCCTCAATGGCCAGTGTTACCTTACTATCCTTAA 702 0.3704 MDWNESSRPFIPLPESSLSFFYNYNNNPSYSGMEVSQASLGDQTQQMFPAMDEMNINGNNNREKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDELKHEFDVISKEKQILQEEVLKLKGKLKEQCNFRTQTQTFGGYKEMSNEETVESTSEGMKCSNRPQGITSSNIQQVAAAEGYNSSFTVEDFNSVSMPPQWPVLPYYP 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02562 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 225 IPR045224 GO:0003700
Car03g02562 233 SUPERFAMILY Homeodomain-like 44 121 IPR009057 -
Car03g02562 233 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Car03g02562 233 Coils Coil 111 145 - -
Car03g02562 233 CDD homeodomain 62 120 IPR001356 GO:0003677
Car03g02562 233 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Car03g02562 233 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 225 - -
Car03g02562 233 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Car03g02562 233 Gene3D - 56 124 - -
Car03g02562 233 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Car03g02562 233 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Car03g02562 233 SMART HOX_1 61 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02562 Car-Chr3 71476918 71479236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02562 1 149 Homeobox Transcription Factor Family AT5G03790 51.205 9.69e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Car03g02562 Homeodomain 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02562 - - gmx:100807872 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02562 03 71476918 71479236 Car03g02562 03 71476918 71479236 ECH
Car04g01963 04 23308107 23309935 Car03g02562 03 71476918 71479236 PCT