Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02543 ATGGAATCCTCTGTCAATCTCGAATTGGATGAATCCACAACCGTTTTGCTCGATCAGCCTTCAAACTCACAGAAAATTTCCACGGTCAACGGTTGCATTGTATACACTCGACTCAAAAGGTCTCTCACTTCGCGTGACGGTTTTTGCCAAGACGTTGATTGCAAGAGATTCAGAGAGAGTTCCGTGCTTCCGCTTAAATCGGAGAACAGAGTCGATTGCTGCAATGGAATTAGCGATGGCGGCGAGTGTGGCGATGAGCTGAAGAGCGAGCCTCGTGAAGTTATGCTGAGAAATTTCAAGCGGATTACAAGATCGGCGATGAAAGCGAAGGTTGATTCCGGTGAGGAGACGGTTACTGTGTCAGAACAACAAGGTACTTCCGGTAAGGTGCCGGTTGGGAATTTCAAGCGGTTTACTCGATCAGCGATGAAAGCAAATGTTGAGTCCGGTGCGGAGACGGTGAATGAGTTAGAACAACACGGTGCTGCCATTGCAAGTAGTGAAGGCAATGGTAAAGTGCCGAGGAATTTCAAGAAGATTACACGATCGGCGATGAAAGTGAAGGTTGAATCCGGTGAGGAGACTGTGACCGAGTTAGAACAACAAGGTGCTGCCGTTGCCAGTGGTAAAGGCTTCAAGCGGATTACACGATCGGCGAAGAAAGCGAACGTCGAGTCCGGCGAGGAAACGGTAACTGAGTTAGAACATCACGGTGCTTCCGTTGCAAATAGTGAAGGTGATGGTGTAGTGAAGACGTTCAAGCGGATTACACGATCGACAGCCATGAAAACGAATGCTGAGTCTGGTGAGGAGATGGTGACGGAGTTAGAACAAGAAGGTGCTGTTGTGGCGAGTGATATCAATGGTGCATTAGCTGCTCCGAGAAACAAGTTGGAGATGAAGATGTCGAAGAAGATTGTGGTCAATAAGAAGCCTACAACAGTCAAGGAACTTTTCCGTACTGGTTTACTTGATGATGTCTCTGTGGTTTACATGGGTGGCATTAAGAAGGCTTCCGGGTTAAGGGGTGTTATTAGAGATGGGGGAATATTGTGCTCGTGCTGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTTGAGATCCATGCTTGCAAACAATATAAAAGAGCAGCAGAGTATATTTGCCTTGAAAATGGGAAGAGCCTGCTTGATCTATTAAGAGTGTGCAGGAGAGCTCCCCTGCATGATTTGGAGGCAACAATTCAAAATATTGTTTGTTCTCCACCTGAGGAAAAATACTTTACTTGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCATGTGTGGAAAGAGTGGGACCTATATGCGGTTCTTGTGCAGAATCAAGGAAATCTGAAGAAAGTTCGAAGATTGTAGTTGGCAAAATAATCAGGTCTCCTAGACCAGTGTGTGTCTCCAAGTCATCCTGTACTTCTGAGCTGCCCCTCACTTCCCAAAAAAAGAGACGCAGGAAGAAAAGAAACAAGTCGTCAAAAAGGGTCAACAGCTCCAATTCTTCCAAGAGTGCTTCTGTGCCTGTTGTACCCAGGAAGGAAGTTACACTGAAGATGAAAAAGAAGTCACTATGCATAAAGTTGAAGACTAAGGCAATCGCTTCAAATTCAAATTGTTTATCTCCGCAAAATACGAGTCAATGGAAGATAACTAAGAAGGATCAGCGGTTGCACAAGTTAGTTTTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGCGGACAGAAATTGCTTGAAGGCTTCAAAAAGGGCTCTGGAATTGTTTGTAGATGCTGCAACACTGAGATCAGTCCCTCACAGTTTGAGGTCCACGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGGGTGTCTCTCCATGAGTTAGCAATATCTCTCTCAAAAGGTCGAAAATACTCTGCAAATGACAATGATGATCTATGCGTTGTTTGTTGGGATGGTGGTAATCTTTTGCTTTGTGACGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGGGAAAAATTTGTGGCCTACAATGTCAATGCTTGGGCTGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATCTCCAAGAGATGCATCCGCATAGTCAAAGACATTGACACTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCAGATCTGGCTTTGGTCCACGCACAATAATACTCTGTGATCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGAGGGACCACAAGATGGCATTTCTGAAGGAATTGCCAAAAGGTAATTGGCTTTGTTGCGACGATTGCACGAGAATACATTCTACTTTGGAGAATGTTTTAGTTAGGGGGGCTGAGAGACTCCCTGAATCTCTCTTGGGTGTAATAAAGAAAAAGCAAGAGGAAAAAGGATTGGATCCCGTCAAAGATATCGATGTGAGATGGAGGCTTCTTAATGGAAAAACCGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTCTCTATCTTTCATGAATGCTTCGATCCTATTGTAGACGCAGCTAGCGGACGTGACCTTATTCCAGCAATGGTTTATGGAAAGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAATCTTCGGCACTGATATTGCTGAACTTCCTTTAGTTGCAACAAGTAATAGTCACCATGGGAAGGGCTACTTCCAGACACTCTTTTCCTGCATTGAGAGGCTCTTGGCTTTCATGAAAGTAAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCACAGTCCATATGGACAGATAAATTCGGCCTTAGCAAGATGAAACCAGAACAGCTTACCAACTACAGAAAGAACTGCAGTCAGTTTGTGAACTTCCAAGGGACAAATATGCTTCATAAAATGGTGCCTCCATGTCGAGTCATCAATAATCAACCTTGA 3072 0.446 MESSVNLELDESTTVLLDQPSNSQKISTVNGCIVYTRLKRSLTSRDGFCQDVDCKRFRESSVLPLKSENRVDCCNGISDGGECGDELKSEPREVMLRNFKRITRSAMKAKVDSGEETVTVSEQQGTSGKVPVGNFKRFTRSAMKANVESGAETVNELEQHGAAIASSEGNGKVPRNFKKITRSAMKVKVESGEETVTELEQQGAAVASGKGFKRITRSAKKANVESGEETVTELEHHGASVANSEGDGVVKTFKRITRSTAMKTNAESGEEMVTELEQEGAVVASDINGALAAPRNKLEMKMSKKIVVNKKPTTVKELFRTGLLDDVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGRRVIPPSQFEIHACKQYKRAAEYICLENGKSLLDLLRVCRRAPLHDLEATIQNIVCSPPEEKYFTCKRCKGCFPSSCVERVGPICGSCAESRKSEESSKIVVGKIIRSPRPVCVSKSSCTSELPLTSQKKRRRKKRNKSSKRVNSSNSSKSASVPVVPRKEVTLKMKKKSLCIKLKTKAIASNSNCLSPQNTSQWKITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKKGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKGRKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNVNAWAAGRVEGVDPIEQISKRCIRIVKDIDTELSGCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAFLKELPKGNWLCCDDCTRIHSTLENVLVRGAERLPESLLGVIKKKQEEKGLDPVKDIDVRWRLLNGKTASPETRPLLLEAVSIFHECFDPIVDAASGRDLIPAMVYGKNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNSHHGKGYFQTLFSCIERLLAFMKVKNLVLPAAEEAQSIWTDKFGLSKMKPEQLTNYRKNCSQFVNFQGTNMLHKMVPPCRVINNQP 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02543 1023 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 901 976 IPR016181 -
Car03g02543 1023 Pfam Tify domain binding domain 591 641 IPR032308 -
Car03g02543 1023 Pfam Tify domain binding domain 343 397 IPR032308 -
Car03g02543 1023 SUPERFAMILY FYVE/PHD zinc finger 645 703 IPR011011 -
Car03g02543 1023 CDD PHD1_AIRE 657 697 - -
Car03g02543 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 727 IPR013083 -
Car03g02543 1023 SMART PHD_3 745 802 IPR001965 -
Car03g02543 1023 SMART PHD_3 657 698 IPR001965 -
Car03g02543 1023 ProSitePatterns Zinc finger PHD-type signature. 658 697 IPR019786 -
Car03g02543 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 742 804 IPR013083 -
Car03g02543 1023 SUPERFAMILY FYVE/PHD zinc finger 737 799 IPR011011 -
Car03g02543 1023 ProSiteProfiles Zinc finger PHD-type profile. 655 700 IPR019787 -
Car03g02543 1023 MobiDBLite consensus disorder prediction 482 517 - -
Car03g02543 1023 Pfam PHD-finger 658 699 IPR019787 -
Car03g02543 1023 PANTHER AUTOIMMUNE REGULATOR 27 1019 - -
Car03g02543 1023 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 27 1019 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02543 Car-Chr3 71327804 71338999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02543 304 1020 PHD Transcription Factor Family AT2G36720 54.645 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car03g02543 TDBD 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02543 - - cam:101512705 2010.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02543 03 71327804 71338999 Car04g01926 04 22190348 22201452 PCT