Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02542 ATGAAATTCAACAGAACCCTCTTTTGGCTCTCTGGCTTTGTCATATTTCTCTTTTCCATCATTGTTGTTCATTACACCACGCCACCTTCCAACTCCTCTAGCACTTCCATTAATAATTCTCAAGGTAGTTTCCATTTTCAATTTGGCATATTAACCAAGATTATAAAGCTCAGTGAGGTTCAAGATTTTGTGTCTTTGCTAATAACAAGTACTGCGAGTAGGAGACATCATCTTAGGAAGTGGCATAAGGAAAAATGTGAGAAGACAAAATGGGCTTCCAATATAATTTTAGATCATAATGCGTCTCTTGTTTTCACGGTTGACTTAGAAGGTTTCGCTAACTTTAGTAGTGTGCAGAAAGCAATTGACGCTGTTCCTGAATCCAACTCTCATACCACTATTATCTTAATTAATTCTGGTACATACAGGGAGAAGGTAGTGGTCTTAGCCAACAAAACAAACTTAGTACTACAAGGTGAAGGGTATCTTAATACAATCATAGAATGGAATGACACTGCAAATTCTACTGGTGGGACTTCCTATAGCTACTCGTTTGGCGTCTTTGCTTCTAAGTTTACTGCTTACAACATTAGCTTTAAGAACAGTGCTCCGACAGCATCACCAGGAGAGGTTGGAGCACAGGCAGTGGCATTGAGAGTTAGCGGTGATCAAACCGCATTCTATGGATGTGGATTCTATGGTGCACAAGACACACTCAATGATGACACTGGAAGACATTATTTTAAGGATTGTTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCAAGATCACTTTATGAGGATTGTACCATAAAGTCAATAGCTAAACAAGATACGATTGGGGTTGATGGGTCTATCACAGCTCAAGGTAGACAATCATTGAAGGAACAAACAGGTTTTTCATTTGTGAATTGCAACATTGTTGGAAGTGGAAAAGTTTGGCTTGGAAGAGCTTGGGGAACATTTGCCACAGTTGTTTTCTCAACAACAAGCATGTCTGATGTTGTAGCTGCTGAGGGATGGAATGATTGGAAAGATCCATCTAGAGACCAGAGTGTCTTCTTTGGGGAGTACCGTTGTATAGGACCTGGAGCAGATTATACATCTAGAGTCTCTTATGCTAAACAACTTAAAGATTATGAAGCAATATCCTATATGAATGTATCATACATTGATGGGAATGATTGGCTTCCTAATCATACTATTTAG 1215 0.3885 MKFNRTLFWLSGFVIFLFSIIVVHYTTPPSNSSSTSINNSQGSFHFQFGILTKIIKLSEVQDFVSLLITSTASRRHHLRKWHKEKCEKTKWASNIILDHNASLVFTVDLEGFANFSSVQKAIDAVPESNSHTTIILINSGTYREKVVVLANKTNLVLQGEGYLNTIIEWNDTANSTGGTSYSYSFGVFASKFTAYNISFKNSAPTASPGEVGAQAVALRVSGDQTAFYGCGFYGAQDTLNDDTGRHYFKDCFIQGSIDFIFGNARSLYEDCTIKSIAKQDTIGVDGSITAQGRQSLKEQTGFSFVNCNIVGSGKVWLGRAWGTFATVVFSTTSMSDVVAAEGWNDWKDPSRDQSVFFGEYRCIGPGADYTSRVSYAKQLKDYEAISYMNVSYIDGNDWLPNHTI 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02542 404 Pfam Pectinesterase 107 396 IPR000070 GO:0030599|GO:0042545
Car03g02542 404 Gene3D - 99 404 IPR012334 -
Car03g02542 404 PANTHER PECTINESTERASE 14-RELATED 10 401 - -
Car03g02542 404 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 10 401 - -
Car03g02542 404 ProSitePatterns Pectinesterase signature 2. 253 262 IPR033131 -
Car03g02542 404 SUPERFAMILY Pectin lyase-like 102 401 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02542 Car-Chr3 71322946 71325492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02542 97 399 Carbohydrate Esterase AT1G05310 55.556 1.21e-122 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02542 - - gmx:100802034 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02542 03 71322946 71325492 Car04g00699 04 6849749 6851953 PCT