Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02539 ATGGTTTCAACTGATTTGGTTGAGAAACGGAGAAAGCAATGCTACAAGAGAAAAGTGGCAGGGTTTTTGAAGGAGATGGAGGAGTTGACCATTCTGTGCGGTATTGAGGCCTGCGCAATTATCCAAGGCCCAGGTGATACCGAACCTATAATGTGGCCATCTCCTGAGGTAGCTGAACAAATACTGGAAAGGCTTCTAGCACATGAAGAGGCTAAAAATGCTCGTCTGTTGGAGGAGACAAAAAGATTGGAAGATGAACTTTTCAAGCTGAATGACAAAGAAAAGTCAATTTTGACTGATCAAATCAATGATGATTGTAAGCCTTTATCTTTATCTGAATTTCAAGAGCTAAACCGTTTATTTTGTATTGGAAAGGAAAGGCTGGAAGCTGCTCTTGAGAAGAAAATCGGCCGATCTGAAGAGGCATTGCCTCAAGATCCTCCTCCACCACCGATAACTTCTCCTTTACAGAATGGGATAGATTCTGGGGCAAACGTAGATGGAAAAGTTTCGGATGGACGCTTATTCTTAAGTCTATTGAAGCGATTTGATCGGATGTGTAAAGGTTCCGATAACAATACAGGTACTAGTAGCAGCACCGTGTTTACTCAAGGCAACATGGGAGGTCTCAACAGTACAACTGATTCAGGGGGGTTTCTTCTGATTGATGGAAATGACTCAGGCTCTGTGGCGCTTCCTCCAGGAAATGTCGGTAGCAGCGGCGAAGGAGGTAACATTTAA 741 0.4345 MVSTDLVEKRRKQCYKRKVAGFLKEMEELTILCGIEACAIIQGPGDTEPIMWPSPEVAEQILERLLAHEEAKNARLLEETKRLEDELFKLNDKEKSILTDQINDDCKPLSLSEFQELNRLFCIGKERLEAALEKKIGRSEEALPQDPPPPPITSPLQNGIDSGANVDGKVSDGRLFLSLLKRFDRMCKGSDNNTGTSSSTVFTQGNMGGLNSTTDSGGFLLIDGNDSGSVALPPGNVGSSGEGGNI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02539 246 PANTHER MADS BOX PROTEIN 10 185 - -
Car03g02539 246 Gene3D - 8 85 IPR036879 GO:0003677|GO:0046983
Car03g02539 246 Coils Coil 59 93 - -
Car03g02539 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 8 45 IPR002100 GO:0003677|GO:0046983
Car03g02539 246 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 10 185 - -
Car03g02539 246 MobiDBLite consensus disorder prediction 139 161 - -
Car03g02539 246 SUPERFAMILY SRF-like 9 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02539 Car-Chr3 71310460 71311386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02539 8 109 Type I MADS-box Gene Family AT3G05860 28.682 4.36e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car03g02539 SRF-TF 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02539 - - mtr:MTR_4g019670 114.39