Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02530 ATGAGTTTGATTGGAGTAACCCTCATTGAGAAGGCAAAGATTGTTGTTGATCCGAAGTATGAAGAGTTATGTGATCATAAAAGGATCTCGTTTCATCTGGAGATTCCAGATGACCTGCAAGGAACAAAAGAAGGAGAGATGCCTATGTCATTTGACTTTATGGATGGGAAACCGGTGCCGATGGAGGAGGAACGACTGCCACTGTTTGTAAGGATCAACAGGGGAGAGAGAGCCAGGTATGTAGATTCAACAACTGCAATGATGGGTGACGATGATATACTCGATCGAGCCGAGGAAATGAGTCCAAAGACTCCAAACAACTATACTTTGGTCAAGTCTCCCGTTGAGAGAAACAGAACTTTCAAAGAGTTCAGTTTCAGAGTGTATAATGGAAAAGCCTTTAACCAAGTGGAAGTCAAACTCGAGATGATTGGACACTATCTCGGCGAATTCTCCATTACATACAAGCCCATTAAACATGGAAGACTTGGTATCGGCGCTACTCACTCCTCCAGTTATGATCTAAAACAATTGCATATTACGAAGTTTTCAGAATTTGGGGATATTTTCCTTAAGCCAAATCTCAGAgagaacctgaagagagctgatgctcgtgctAAGAAAGCATTCGAAAGAACTTGTGTTGTCTCGGAACCGAAAATAAAGCACACTGTTATTCTCAAAAAGATTTTTAAAGCAAAAAAGGATGCATCACCCGTGTATAATGGAAAAGCCTTTAACCAAGTGGAAGTAAAACTCGAGATGATTGGTCACTATCTCGGCGAATTCTCCATTACATACAAGCCCATTAAACATGGAAGACCTGGTATCAGCGCTACTCACTCCTCCAGgagaaccttgaagagagctgatgctcgtgctCGTGCTAAGAAAGCATTCGAAAGAACTTGTGTTGTCTCGGAACCGAAAATAAAGCACACTGCTATTCTCAAAAAGATTTTTAAAGCAAAAAAGGATGCATCACCCGTGTATAATGGAAAAGCCTTTAACCAAGTGGAAGTCAAACTCGAGATGATTGGTCACTATCTCGGCGAATTCTCCATTACATACAAGCCCATTAAACATGGAAGACCTGGTATCGACGCTACTCACTCCTCCAGgagaaccttgaagagagctgatgctcgtgctCGTGCTAAGAAAACATTCGAAAGAACTTGTGTTGTCTCGGAACCGAAAATAAAGCACACTGCTATTCTCAAAAAGATTTTTAAAGCAAAAAAGGATGCATCACCCGTGTATAATGGAAAAGCCTTTAACCAAGTGGAAGTAAAACTCGAGATGATTGGTCACTATCTCGGCGAATTCTCCATTACATACAAGCCCATTAAACATGGAAGACCTGGTATCAGCGCTACTCACTCCTCCAGTTATAATCTAAAACAGTTATGTTCAAAGCAGAAGTTATTTGCATATgagaacctgaagagagctgatgctcgtgctAAGAAAGCATTCGAAAGAACTTGTGTTGTCTCGGAACCGAAAATAAAGCACACTGTTATTCTCAAAAAGATTTTTAAAGCAAAAAAGGATGCATCACCCGGTGAGAAACCAAGGGCCATCAAAACGCATTTAAGAGACCTTCTTATTGTACCTGAGATGATTGGAAACATCCTCTAG 1644 0.3735 MSLIGVTLIEKAKIVVDPKYEELCDHKRISFHLEIPDDLQGTKEGEMPMSFDFMDGKPVPMEEERLPLFVRINRGERARYVDSTTAMMGDDDILDRAEEMSPKTPNNYTLVKSPVERNRTFKEFSFRVYNGKAFNQVEVKLEMIGHYLGEFSITYKPIKHGRLGIGATHSSSYDLKQLHITKFSEFGDIFLKPNLRENLKRADARAKKAFERTCVVSEPKIKHTVILKKIFKAKKDASPVYNGKAFNQVEVKLEMIGHYLGEFSITYKPIKHGRPGISATHSSRRTLKRADARARAKKAFERTCVVSEPKIKHTAILKKIFKAKKDASPVYNGKAFNQVEVKLEMIGHYLGEFSITYKPIKHGRPGIDATHSSRRTLKRADARARAKKTFERTCVVSEPKIKHTAILKKIFKAKKDASPVYNGKAFNQVEVKLEMIGHYLGEFSITYKPIKHGRPGISATHSSSYNLKQLCSKQKLFAYENLKRADARAKKAFERTCVVSEPKIKHTVILKKIFKAKKDASPGEKPRAIKTHLRDLLIVPEMIGNIL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02530 547 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 205 284 IPR002222 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 387 465 IPR002222 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 127 173 IPR002222 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 SUPERFAMILY Ribosomal protein S19 329 363 IPR023575 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 Gene3D 30s Ribosomal Protein S19; Chain A 113 176 IPR023575 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 Gene3D 30s Ribosomal Protein S19; Chain A 417 464 IPR023575 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 Gene3D 30s Ribosomal Protein S19; Chain A 192 288 IPR023575 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 Gene3D 30s Ribosomal Protein S19; Chain A 327 378 IPR023575 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 295 374 IPR002222 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 SUPERFAMILY Ribosomal protein S19 419 453 IPR023575 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 503 545 IPR002222 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 ProSitePatterns Ribosomal protein S19 signature. 242 266 IPR020934 GO:0003723
Car03g02530 547 ProSitePatterns Ribosomal protein S19 signature. 130 154 IPR020934 GO:0003723
Car03g02530 547 ProSitePatterns Ribosomal protein S19 signature. 422 446 IPR020934 GO:0003723
Car03g02530 547 PANTHER 40S RIBOSOMAL PROTEIN S15 205 284 - -
Car03g02530 547 PANTHER 40S RIBOSOMAL PROTEIN S15 503 545 - -
Car03g02530 547 ProSitePatterns Ribosomal protein S19 signature. 332 356 IPR020934 GO:0003723
Car03g02530 547 Coils Coil 192 212 - -
Car03g02530 547 Gene3D 30s Ribosomal Protein S19; Chain A 465 547 IPR023575 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 PANTHER 40S RIBOSOMAL PROTEIN S15 387 465 - -
Car03g02530 547 PANTHER 40S RIBOSOMAL PROTEIN S15 127 173 - -
Car03g02530 547 PANTHER 40S RIBOSOMAL PROTEIN S15 295 374 - -
Car03g02530 547 SUPERFAMILY Ribosomal protein S19 122 161 IPR023575 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 Pfam Ribosomal protein S19 330 362 IPR002222 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 Pfam Ribosomal protein S19 420 452 IPR002222 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 Pfam Ribosomal protein S19 124 160 IPR002222 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 Pfam Ribosomal protein S19 240 272 IPR002222 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 SUPERFAMILY Ribosomal protein S19 239 273 IPR023575 GO:0003735|GO:0005840|GO:0006412
Car03g02530 547 SUPERFAMILY Ribosomal protein S19 505 546 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02530 Car-Chr3 71212563 71222520 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02530 505 547 Cytoplasmic Ribosomal Protein Gene Family AT5G09510 53.488 3.57e-09 53.1