Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02525 ATGTTCCAAAGAATCTGCATTTTGTTAATCACAGTAATTCTGAGTTCGTTTTCACCACTTGGAAAAGCAATGTTGAACTTAACACTTCCCGGAACACATCCTGACCCTGAAGCTGTTGCCCACGAAGTTCATAGGAAGGTGAATGCTTCAATGGCAAGAAGGGAAATGCTATCATCAGAAGGATCAGCATGCATGACAGGGAACCCAATTGATGATTGTTGGAAATGCGATCCAGAATGGCCAAACAATCGACAGAAGTTAGCAGATTGTGCAATTGGGTTTGGTCAGTATGCAAAAGGAGGAAAAGGTGGTGAATTTTATGTTGTAACAGATTCTTCAGATGATGATGCGGTTAATCCAAAACCGGGTACGTTAAGATATGGTGTGATACAAAATGAAGCATTGTGGATCGTGTTCCCTAGTAATATGTTGATTGAGTTGAAGCAGGAATTGATATTTAATAGTTATAAGACTATTGATGGACGTGGTGCTGATGTTCATATTGTGGGAGGAGGGTGTATCACTCTGCAGTATATTAGTAATGTTATCATACACAACATTCATATTCACCATTGTCACCCCTCAGGTAACACAAATGTGCGATCAAGTCCAGAACACTACGGGTACAGAACAGAATCAGACGGTGATGGAATATCTATATTCGGTTCAAAAGACATATGGATCGACCACTGTACACTCTCACGTTGCAAAGACGGATTAATAGACGCCATAATGGGGTCCACTGGAATAACAATATCAAACAACTTTATGTCACACCACAACGAAGTCATGCTCCTTGGACACAGTGACAATTACCTCCCTGACTCTGGAATGCAAGTCACAATTGCATTCAACCATTTCGGTGAGAAACTCATTCAGAGAATGCCACGTTGCAGAAGAGGTTATATCCACGTGGTCAACAATGAGTTTACTCAATGGGAAATGTATGCTATTGGAGGGAGTGGTGAACCAACTATTAATAGTCAGGGAAATCGTTACACTGCACCCATTAACCCTTTTGCTAAAGAAGTTACTAAGAGGGTTGAAACGGAACAGAGTCAATGGAAAGGCTGGAATTGGAGATCTGAAGGTGATATTTTGATTAATGGTGCTTTTTTTATTACCTCTGGTCAAAGTCTTGAGATTAAGTATGAGAAGGCTTTTAGTGTTGAACCTCAATCAGCTGATCGCATTCTTCTTCTTACCATGAATGCCGGTGTTCTCGGTAATGCAAGGGACAATAATGTGGGAATGTGGAGTAGAGGTCCAAGCGGCAACAACGATGGTGTTTCATCAGATTCTGGTCCATATTACACGGATGATATGTCGGGAACTGGTTTAGTGGTGTTGTCGTATTCTTTTACTATGTTCTTGTGCCTCTTGTTGTCTTATAGAGTCATACAATTAATAGTTACTCAATGA 1422 0.4065 MFQRICILLITVILSSFSPLGKAMLNLTLPGTHPDPEAVAHEVHRKVNASMARREMLSSEGSACMTGNPIDDCWKCDPEWPNNRQKLADCAIGFGQYAKGGKGGEFYVVTDSSDDDAVNPKPGTLRYGVIQNEALWIVFPSNMLIELKQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAIMGSTGITISNNFMSHHNEVMLLGHSDNYLPDSGMQVTIAFNHFGEKLIQRMPRCRRGYIHVVNNEFTQWEMYAIGGSGEPTINSQGNRYTAPINPFAKEVTKRVETEQSQWKGWNWRSEGDILINGAFFITSGQSLEIKYEKAFSVEPQSADRILLLTMNAGVLGNARDNNVGMWSRGPSGNNDGVSSDSGPYYTDDMSGTGLVVLSYSFTMFLCLLLSYRVIQLIVTQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02525 473 Gene3D - 67 409 IPR012334 -
Car03g02525 473 Pfam Pectate lyase 149 328 IPR002022 -
Car03g02525 473 PANTHER PECTATE LYASE 18-RELATED 3 425 IPR045032 GO:0030570
Car03g02525 473 PANTHER PECTATE LYASE 12-RELATED 3 425 - -
Car03g02525 473 SMART amb_all 142 339 IPR002022 -
Car03g02525 473 PRINTS Pollen allergen Amb family signature 90 107 IPR018082 -
Car03g02525 473 PRINTS Pollen allergen Amb family signature 114 139 IPR018082 -
Car03g02525 473 PRINTS Pollen allergen Amb family signature 150 166 IPR018082 -
Car03g02525 473 PRINTS Pollen allergen Amb family signature 214 235 IPR018082 -
Car03g02525 473 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Car03g02525 473 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Car03g02525 473 PRINTS Pollen allergen Amb family signature 358 382 IPR018082 -
Car03g02525 473 PRINTS Pollen allergen Amb family signature 387 410 IPR018082 -
Car03g02525 473 SUPERFAMILY Pectin lyase-like 62 381 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02525 Car-Chr3 71147829 71151355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02525 1 473 Polysaccharide Lyase AT3G53190 73.029 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02525 K01728 - gmx:100775595 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02525 03 71147829 71151355 Car03g02525 03 71147829 71151355 ECH
Car03g02525 03 71147829 71151355 Car04g01909 04 20941189 20944244 PCT