Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02508 ATGGGAAGAGCTCCTTGCTGTGACAAGGCTAATGTAAAGAAAGGACCATGGTCTCCTCAAGAAGATGCTAAGCTAAAAGATTACATAGAAAAACATGGAACAGGAGGCAACTGGATTACTCTTCCAAAAAAAGTTGGTTTGATAAGGTGTGGCAAAAGCTGTAGATTAAGATGGCTTAATTATCTTAGACCAAACATTAAGCATGGAAAGTTCTCTGACTTAGAAGATCAAATAATTTGTACCCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTCATTTAGAAGGCAGGACTGACAATGATGTAAAGAATTACTGGAACACCAAGCTTAAGAAAAAGATTATGGCTAATATTAATCATTCAATAGAGATGAAAGCTCAACAAATTACCCTTTTACCCTATCAATCCCAAGAATCTTTCACAGGGTCTTATTCCTACTCATCAACATCAAGTCTTTTGAGTGGAAATTCTTCTACTTCTGCAGCACAAGAAAGTTTCAACATTGGTCCCACTGAAAAGTGCCAATTATTCAAAGATATCAATGTCATTGATCAAGAGCTTGTTGCAAAGTGTGGTGATATTAATTATCTCTACAATGATGTGGAAGATAGTGAGAAGTTGATGTTTTCAAATGATGAAAATGGATTGTGGGGAGAAAATACATTGGATTATGGTTTAGATGAAATTAATAAAGAGATAATAAGCACTGATATTAGTAGTTGCAAAAAGTATTTGTTTGATGACTAA 756 0.3492 MGRAPCCDKANVKKGPWSPQEDAKLKDYIEKHGTGGNWITLPKKVGLIRCGKSCRLRWLNYLRPNIKHGKFSDLEDQIICTLFASIGSRWSIIASHLEGRTDNDVKNYWNTKLKKKIMANINHSIEMKAQQITLLPYQSQESFTGSYSYSSTSSLLSGNSSTSAAQESFNIGPTEKCQLFKDINVIDQELVAKCGDINYLYNDVEDSEKLMFSNDENGLWGENTLDYGLDEINKEIISTDISSCKKYLFDD 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02508 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Car03g02508 251 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car03g02508 251 Gene3D - 69 134 - -
Car03g02508 251 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Car03g02508 251 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 164 - -
Car03g02508 251 CDD SANT 16 62 IPR001005 -
Car03g02508 251 Gene3D - 7 68 - -
Car03g02508 251 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Car03g02508 251 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Car03g02508 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Car03g02508 251 SMART sant 13 64 IPR001005 -
Car03g02508 251 SMART sant 67 115 IPR001005 -
Car03g02508 251 CDD SANT 70 113 IPR001005 -
Car03g02508 251 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Car03g02508 251 PANTHER OS09G0431300 PROTEIN 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02508 Car-Chr3 71005763 71007480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02508 1 163 MYB Transcription Factor Family AT2G36890 66.258 8.45e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g02508 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02508 K09422 - gmx:778084 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02508 03 71005763 71007480 Car03g02508 03 71005763 71007480 ECH