Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02489 ATGGCTAATCAACCTGAATCTTCCGATGCTAAGGGAACGAAGAGAGACTTTAGCACTGCGATTCTGGAGCGCAAGAAAGCGCCGAATCGTTTGGTTGTTGACGAAGCCGTCAACGATGATAACTCCGTTGTTGCTCTTCATCCAGATACCATGGAAAAGCTTCAGCTATTCCGCGGTGACACTATCTTGATCAAGGTAACGAAAAGGAAAGATACTATCTGTATTGCACTTGCAGATGAAACATGTGAGGAACCAAAAATACGAATGAACAAGGTTGTGAGAAACAATCTCAGGGTTAGGCTTGGAGATGTTGTTTCGGTGCATCAATGTGCGGATGTTAAATATGGAAAGCGCGTTCACATTCTTCCTGTGGATGATACTATTGAAGGAGTTACAGGGAATCTCTTTGATGCATACTTAAAACCTTACTTCCTTGAGGCATATAGACCAGTGAGAAAGGGAGACTTCTTCCTTGTTAGAGGGGGGATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGACCCATCTGAGTACTGTGTTGTTGCCCCAGACACAGAGATCTTCTGTGAAGGAGAGCCCATTAAAAGGGAAGATGAGAATCGATTAGATGAGGTTGGTTATGATGACGTTGGTGGTGTAAGAAAGCAGATGGCACAGATTAGGGAGCTGGTGGAACTGCCTCTGAGGCACCCACAGTTATTCAAGTCTATTGGTGTCAAGCCACCAAAAGGAATTCTGTTGTATGGACCCCCTGGATCTGGCAAGACTTTAATTGCTCGTGCAGTTGCAAATGAAACAGGTGCCTTCTTTTTCTGCATTAATGGCCCTGAGATCATGTCAAAACTTGCTGGCGAGAGTGAAAGCAATCTAAGGAAGGCATTTGAGGAAGCAGAGAAGAATGCTCCGTCCATCATCTTCATTGATGAGATAGATTCCATAGCTCCTAAGCGAGAGAAGACTCACGGTGAAGTTGAGAGGAGGATTGTTTCCCAGCTCTTGACCCTCATGGATGGTCTTAAATCACGAGCTCATGTAATCGTTATGGGAGCCACAAATCGGCCCAATAGCATTGACCCTGCACTTAGGAGATTTGGAAGGTTTGATCGGGAGATTGATATTGGTGTTCCAGATGAAGTCGGGCGTCTCGAGGTTCTCCGAATTCATACAAAGAATATGAAGCTTGCAGAAGATGTTGATTTAGAAAAGATTGCCAAGGATACACATGGCTATGTTGGTGCTGATCTAGCTGCTTTGTGTACTGAAGCAGCACTTCAATGCATCAGAGAGAAAATGGATGTGATTGACTTGGAAGATGAGACAATTGACGCCGAAATATTGAACTCTATGGCAGTGTCAAATGAGCATTTCCAGACTGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTTCCCAATTGCAGCTGGGAAGATATTGGAGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCCGAAAAATTTGAGAAATTTGGAATGTCACCTTCTAAGGGAGTTCTTTTCTATGGTCCTCCTGGCTGTGGTAAAACACTTTTGGCCAAAGCTATTGCCAATGAATGCCAGGCAAACTTCATCAGTGTAAAAGGTCCTGAGCTACTCACAATGTGGTTTGGAGAAAGTGAGGCTAACGTGAGGGAAATTTTTGACAAGGCTCGTGGTTCTGCTCCGTGTGTTCTATTCTTTGATGAACTTGACTCCATTGCAACTCAGAGAGGCAGTAGTGTTGGAGATGCTGGGGGTGCTGCTGACAGAGTTTTGAACCAGCTGCTGACAGAAATGGATGGGATGTCAGCAAAGAAAACTGTGTTCATCATTGGCGCCACTAATCGACCAGACATTATAGACCCAGCCCTTCTGCGTCCAGGCCGTCTAGATCAGTTGATTTATATCCCCCTCCCAGATGAAGATTCACGTCATCAGATATTTAAAGCTTGCTTGAGAAAATCCCCCATCTCAAAAGATGTTGATATTAGAGCTCTTGCAAAGTACACCCAAGGATTTAGTGGTGCTGATATTACTGAAATTTGCCAGCGTGCATGCAAGTATGCCATAAGAGAGAACATTGAGAAGGACATTGAAAGAGAGAGAAGGAGAAGTGAGAACCCTGAAGCCATGGAAGAGGATGTTGAAGATGAGGTAGCTGAAATCAAGGCAGCTCATTTTGAGGAATCAATGAAGTATGCACGAAGGAGTGTTAGTGATGCTGACATTCGCAAATACCAGGCATTTGCTCAAACATTGCAGCAGTCCAGAGGGTTTGGATCTGAGTTTAGGTTTGCAGATTCCAGCTCTGGTGGCACTACTGCTGCTGCAGGGACATCTGACCCATTTACATCTGCTGGTGGAGCTGATGATGATGATCTTTACAGTTAG 2430 0.444 MANQPESSDAKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPDTMEKLQLFRGDTILIKVTKRKDTICIALADETCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPSEYCVVAPDTEIFCEGEPIKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGSSNPSALRETVVEVPNCSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADSSSGGTTAAAGTSDPFTSAGGADDDDLYS 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02489 809 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 781 - -
Car03g02489 809 Gene3D - 210 374 IPR027417 -
Car03g02489 809 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Car03g02489 809 SMART AAA_5 241 377 IPR003593 -
Car03g02489 809 SMART AAA_5 514 653 IPR003593 -
Car03g02489 809 SMART CDC48_N_2 30 113 IPR003338 -
Car03g02489 809 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Car03g02489 809 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Car03g02489 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Car03g02489 809 Gene3D - 655 763 - -
Car03g02489 809 Gene3D - 7 112 - -
Car03g02489 809 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Car03g02489 809 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 31 767 IPR005938 GO:0016787
Car03g02489 809 Pfam AAA+ lid domain 397 439 IPR041569 -
Car03g02489 809 Pfam AAA+ lid domain 673 713 IPR041569 -
Car03g02489 809 SMART CDC48_2_2 130 196 IPR004201 -
Car03g02489 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 764 IPR027417 -
Car03g02489 809 MobiDBLite consensus disorder prediction 775 809 - -
Car03g02489 809 CDD AAA 484 651 - -
Car03g02489 809 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Car03g02489 809 MobiDBLite consensus disorder prediction 775 794 - -
Car03g02489 809 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Car03g02489 809 Gene3D - 468 651 IPR027417 -
Car03g02489 809 Gene3D - 113 209 - -
Car03g02489 809 CDD AAA 211 374 - -
Car03g02489 809 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Car03g02489 809 PANTHER AAA-FAMILY ATPASE 5 781 - -
Car03g02489 809 Gene3D - 376 467 - -
Car03g02489 809 SUPERFAMILY ADC-like 27 110 IPR009010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02489 Car-Chr3 70714683 70719565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02489 447 710 Calmodulin-binding Proteins AT3G56690 47.727 1.47e-79 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02489 K13525 - gmx:100791603 1533.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02489 03 70714683 70719565 Car03g02489 03 70714683 70719565 ECH