Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02482 atGGCCCACAAAGGTTCTTTTTCCCGTCCTCCTCAGTCACCTTTTTCCATCTTTGCCTTCATTCCGCACACCATTGTTCCTCTGCATTGTTCCTCTGCCCATGGTGTGTGTTTTGTTTATAAAGAAGAACGTGATTTGAGTTTTGAACTGTTTTTGCAAAGTGCTCAGGAGAACGAGACAGTTGTTTTTGATATGAAAGCTCGAACTCTTGTTACTGATGATGGAGGGAATTCTGATTCAAGGCATGACAAGGGATTAACTGAAGATAATACACAAGTGGATCTTCGTGGGGAAAATGGAAAAGGTGACGAGGAAGATGTATGTTTCAAGTGCTCGCATGGAGGAACACTCTGGCGTTGTTGTGGAAGAGGATGTCAAAGGGGGTATCACCCATCTTGTCTGGACCCTCCTCTCAAATTTCTTCCTCTAGGGTTTTGGCATTGTATTTCGTGTGTTGAGAAAAAAATAAAGCTCGGTGTGCATTCAGTTTCTAAAGGGGTGGAATGCATATTGGACTCCCAAGATGTGGTTTCAAAAGGTGAAGTGATGCGAAGGGAGTACTTTGTCAAGTATCAGGGCCTCGCTCATGCTCACAACCGTTGGATTACAGAAAAACAAATGCTTACTGTGGCTCCAAAGCTTTTGGAAAAGTATAAGAAGAAACAACAGGCTGTCAGGTGGAAAAAAGATTGGAGTATGCCTCACCGATTGCTTATGAAAAGGGATATTATATTGTCCAAGCAAAATGCTCACCCTTTTGATGGACATGATGAGAATGATTCAATTTGCCGCTATGAGTGGCTTGTGAAATGGACCGGTCTTGGTTATGATCATGTTACATGGGAGTTAGATGACACTTCATTTATGACATCATCTAAAGGCATGAAACTCGTGGACAATTATGAAAGTCTTCGAATGAGATCAGATGGACTGTCAAATCCTCTTGAAGCTAATGAGGAGAGAAAAGTTTTTTTTACCGAATTATCAGTGATACCATATGGAGATTCACCAGGATTGTATAACCAGCATTTGAGTTATGTGAACAGGCTTCGCATGTGTTGGCACAAAGGTCAGAGTGCTGTTATTGTTGATGATCAAATTGACCAGGAGCGGGTTAGGAAGGTGATTTTGTTTATATTATCTTTGAGTTGTAATGTGAAAAGGCCTTTTCTCATCATCTCAACTTCCACTGGCATCTCTGCATGGGAAACAGAATTCTTACATTTGGCACCATCTGCCAATGTTGTAGTTTACAAGGGAAACAAAGATGTACGCTGTAGCATCAGGGCATTAGAGTTTTATAATGAAGATGGTGGTATTTTATTTCAAATATTACTATCATCATCTGAAATTATTATTGAGGACTTACATGCACTAAGATACATTCAATGGGAAGCAATAATAATTGATGAATGCCAGCGATCCAAAATTTTAGGTCACATTGACAACATCAACATTCTCGCAGCTGAGATGAGGCTCCTTCTCATTAGTGGACAAATCAAGGAAGATCGAGCTGACTATATCAAACTGCTTTCATTCCTTCAGTCTGGACATGATGAGTTAAATATTTCTATGAAGGAGACTTACCTATCTGCAAGCATTTCCAATTTGAAGAGTCAATTGGAACAATATATTGCATTTAAGGGCAATTCTGGCTCCAGCAGGTTTATAGAGTATTGGGTTCCTGCCCAGCTTTCTAGTTTGCAGCTTGAGCAGTATTGTTCGATGCTGCTTTCAAACTCAATGTTATTATGCTCAGGCCAAAAGTATGACTCAGTTGACGCCCTCCGTGACCTTATTATTTCAACCAGGAAGTGCTGCAACCACCCTTTTCTTCTCAACCAGTCACTGAATAGTTTATTGATTAGAGGTCTACCTGTTGAAGAGCATTTAGATATTGGAATAAGAGCAAGTGGAAAACTGCAACTTCTTGAAAAAATCCTTTTTGAAGCTAAAACTCGTGAGCTAAGAGTGATAATAATATTTCAGTCTAGTGGTGGTTCTGGATCAATTGGAGATATTTTGGATGATGTTCTCTGTCACAAATTTGGAAAAGATTGCTATGTACGATATGGTAGGGGTTACATTCCTTCAAAGAAACAAGCTGCTTTGGATACTTTTAATGATAGAGAAAGTGGCAAATTTGTTTTCTTGATAGAGAGCCGTGCTTGTCTCCCTAGCGTTAAGCTCTCATCTGTAGATACTGTTATATTATTTGACAGTGACTGGGACCCGCAAAATGACCTAAAATGCGTACAAAAGATGTCTATCAGCTCAAAGTTTAACGAGTTAACAGTTTTGAGATTGTACTCATACTTCACTGTTGAAGAAAGGGTTTTAATGCTTGCAAAAGAGGGTGTAGCTCTTGACAGCAATATGCAGTTAGTTAACCAGAGTAGTACTTATCACACCCTGCTAAAATGGGGTGCTTCCTATCTGTTTAGTAAGCTTGACGACTTTCACGGAAGTGACACCTCAGTGTCTGCTTCAGATATCTCTGATCAGTCAATTCTAAATGATGTAATCTGTGAATTATCATCCAAATTAGTTTGTGATAGGGATGGCAGTGATTGTCACGGACAGTCATTCTTATCAAGAGTACAACAGAATGGAGCGGAATATGCAAAGAGCATTTCATTGCTAGGAGAAAGAGAAATGAAGAAATTGAGCAATGAAACACATACTTTTTCCTGGAGTGATCACCTCAAAGGAAGGAATCCTCAATGGAAGTTTTTGCCTGTTTCGTCTCAAAGGATCAGAAAAACAGTTGAATATTTTCATCACATACCAGAAGGATCTGAATATGAAAATGATTCCATTATATGTAAGAGGAGGACAGAGTCCAAGGATAATGTTTATCCCACAAGAAAGAAAGTGTCCAAGGATAATGTAGATCCCGAGGAGAGGAAAGTCACCAAGGATAATGTTGACCCCAAAAGAAGGAAAGTGTCTGAGGATATTGTTGGTACAAAGAGGAAGGAATTGTCAAAGGGTGTTGCTGATCCTAAGACTAGGAAGTTGTCCAAGAATATTATTGATGATGCAGAGAGGAGGAAAGCGTCCAAGGAAGTTATTGATTCCAAGGGCAGGAAAGTGTCTGTGGATACTGTTGGTTCCAAATATTTGAAAAAAAAGTGGAAGAACAAGAAGAATGGACGGGCTAGTAAAAGGGAAAGGAAATTGAATGGAGCAGCTGTAATGAACAAACATATTCCAAAACAAAAGAAACTGCCTGACATGCCCAAGAACACCAAATTCTTGTCAAAGCCGGATATATCAGGTCTATGTGATGTTCTACACTTTTCGGAAAATGTCAAGGCTGTCGCTATGATGATTCTTGAGTATGTATTCAAACATTACGATGTTAATAATTGCCGGGAAGTTTCTACAGTGCAGGCATTTCAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAACACAAGATTGATAAAAAACATTCAGTTGACCTTGCAAAACGGCACTTGAATTTCAATTGCAAGGAGGAAGAAGCCTCCTATGTTTACAATGAACTGCAGAAGTATGAGAAGGATTTTTCAAGCTGTTTACAAAATGAACTTTGTGTTGAGAAAAGTAATATGAATGGCGGTTCAGACTCCTTGACACCCGAGCTGATTGATTTGGTAGAGGAGGAGAAGCAGAAGGGTTTTCAGCATCCTCATGTTTTAAATAGTATGAAATTTGCCTCAAATGAACCCGATCTTCCAAGAAAATCTCCCAAAACAGTGCTATTTTCACAAGACCAGATTTATACAGAAAATTTTCATAACGGACCTTTTATGGCTCATGAAAATTCTACATCTCAACAGACCCCTGGTAGTTTGCCTGTGGAAGCAGATGCTACTTCCAAGGAATCTGATGCAGATGAGAGAATGAATGCCATGTCCTCAGTAGCAGCCGAAGTTTCATCCCTCGAGCACCGGAATAAAAACCCCAATTCAAGTAATGATCTCAATGATGTCAACCCTGATACTTGTTCTTTGAAAAGACAGTGTCCCATTGTAAGTTCAGAGATTACACAATCTGATGGAAAAGTTTCTGAAGATCCTCAAACATTAATGATTGAAGTGATTGACATTGACAATTCTATGAATATGTCAACTCATCCTGCACAACTTCACAATGTTGAGATGGATGCTGTAACTTGTGATAGTACTGCTGTACCTGAGGTCAGATATCGGTTTGGTATAGGGAGTCCTGTACGCGGTGAGTCAACTACTTCAGAGTTTGCAGAGGTGCAACCATCAAACGCAAATTTGATGCCATTACTGCAGACGTCTTTGTCAGCTAGTCCATCTTTTATGGAGGACTTATCTAGTACAGTCATGCCTCTAGAGAGATTTGTGTGTCATTATAACAGTGGTCGAGATCATGGTCACACTCACGAGGCTGAAGAAATATTGCAAGCACTGATGGACTCAGTGGAACCAGTTAACTCTTCCTTTGTTTTGCCAGTGACATCTCAACCCTCCAGTTACGCAACTGAAAATGAAAATGCTACGCGTGCTCCTTATGACATTACTAATCCTGAATGTATGAGCAGTGGTCCTTTTCAACTTCATTATGCGACATCTGGAATGCCCCGGTTTGCAGACTCTGACTCATTGCTAATTGAAATGGCGCGGATAAGAAAGATGAATGAAGAAGCCTGCAAGATACACGAGGAAAATATATTGCAGCTGCAGTCTGACTTCAAAAAGGAGTTTGAAGAGTTAGGTGAAAAGTACAGTATGTTGCATCAAAATCTCGATATTGCAGTAGCATTAAAGAATAAGGAACTTGAGACACAACGTAATATCGTTCGCATGCATATGCTATTAGCTGAGGCTTGGATCCTACCTGATAGTTTCTAA 4875 0.3975 MAHKGSFSRPPQSPFSIFAFIPHTIVPLHCSSAHGVCFVYKEERDLSFELFLQSAQENETVVFDMKARTLVTDDGGNSDSRHDKGLTEDNTQVDLRGENGKGDEEDVCFKCSHGGTLWRCCGRGCQRGYHPSCLDPPLKFLPLGFWHCISCVEKKIKLGVHSVSKGVECILDSQDVVSKGEVMRREYFVKYQGLAHAHNRWITEKQMLTVAPKLLEKYKKKQQAVRWKKDWSMPHRLLMKRDIILSKQNAHPFDGHDENDSICRYEWLVKWTGLGYDHVTWELDDTSFMTSSKGMKLVDNYESLRMRSDGLSNPLEANEERKVFFTELSVIPYGDSPGLYNQHLSYVNRLRMCWHKGQSAVIVDDQIDQERVRKVILFILSLSCNVKRPFLIISTSTGISAWETEFLHLAPSANVVVYKGNKDVRCSIRALEFYNEDGGILFQILLSSSEIIIEDLHALRYIQWEAIIIDECQRSKILGHIDNINILAAEMRLLLISGQIKEDRADYIKLLSFLQSGHDELNISMKETYLSASISNLKSQLEQYIAFKGNSGSSRFIEYWVPAQLSSLQLEQYCSMLLSNSMLLCSGQKYDSVDALRDLIISTRKCCNHPFLLNQSLNSLLIRGLPVEEHLDIGIRASGKLQLLEKILFEAKTRELRVIIIFQSSGGSGSIGDILDDVLCHKFGKDCYVRYGRGYIPSKKQAALDTFNDRESGKFVFLIESRACLPSVKLSSVDTVILFDSDWDPQNDLKCVQKMSISSKFNELTVLRLYSYFTVEERVLMLAKEGVALDSNMQLVNQSSTYHTLLKWGASYLFSKLDDFHGSDTSVSASDISDQSILNDVICELSSKLVCDRDGSDCHGQSFLSRVQQNGAEYAKSISLLGEREMKKLSNETHTFSWSDHLKGRNPQWKFLPVSSQRIRKTVEYFHHIPEGSEYENDSIICKRRTESKDNVYPTRKKVSKDNVDPEERKVTKDNVDPKRRKVSEDIVGTKRKELSKGVADPKTRKLSKNIIDDAERRKASKEVIDSKGRKVSVDTVGSKYLKKKWKNKKNGRASKRERKLNGAAVMNKHIPKQKKLPDMPKNTKFLSKPDISGLCDVLHFSENVKAVAMMILEYVFKHYDVNNCREVSTVQAFQISVCWLAASLLKHKIDKKHSVDLAKRHLNFNCKEEEASYVYNELQKYEKDFSSCLQNELCVEKSNMNGGSDSLTPELIDLVEEEKQKGFQHPHVLNSMKFASNEPDLPRKSPKTVLFSQDQIYTENFHNGPFMAHENSTSQQTPGSLPVEADATSKESDADERMNAMSSVAAEVSSLEHRNKNPNSSNDLNDVNPDTCSLKRQCPIVSSEITQSDGKVSEDPQTLMIEVIDIDNSMNMSTHPAQLHNVEMDAVTCDSTAVPEVRYRFGIGSPVRGESTTSEFAEVQPSNANLMPLLQTSLSASPSFMEDLSSTVMPLERFVCHYNSGRDHGHTHEAEEILQALMDSVEPVNSSFVLPVTSQPSSYATENENATRAPYDITNPECMSSGPFQLHYATSGMPRFADSDSLLIEMARIRKMNEEACKIHEENILQLQSDFKKEFEELGEKYSMLHQNLDIAVALKNKELETQRNIVRMHMLLAEAWILPDSF 1624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02482 1624 SMART PHD_3 107 152 IPR001965 -
Car03g02482 1624 MobiDBLite consensus disorder prediction 75 98 - -
Car03g02482 1624 Gene3D - 166 226 - -
Car03g02482 1624 ProSiteProfiles Zinc finger PHD-type profile. 105 154 IPR019787 -
Car03g02482 1624 Gene3D - 339 555 IPR038718 -
Car03g02482 1624 MobiDBLite consensus disorder prediction 1265 1298 - -
Car03g02482 1624 Gene3D - 1540 1620 - -
Car03g02482 1624 MobiDBLite consensus disorder prediction 1311 1331 - -
Car03g02482 1624 MobiDBLite consensus disorder prediction 1265 1284 - -
Car03g02482 1624 MobiDBLite consensus disorder prediction 73 98 - -
Car03g02482 1624 Gene3D - 242 322 - -
Car03g02482 1624 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1251 1617 - -
Car03g02482 1624 Pfam SNF2-related domain 375 517 IPR000330 GO:0005524|GO:0140658
Car03g02482 1624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 518 IPR027417 -
Car03g02482 1624 MobiDBLite consensus disorder prediction 951 1003 - -
Car03g02482 1624 Gene3D - 556 790 IPR027417 -
Car03g02482 1624 ProSitePatterns Zinc finger PHD-type signature. 108 151 IPR019786 -
Car03g02482 1624 ProSiteProfiles Chromo and chromo shadow domain profile. 165 230 IPR000953 -
Car03g02482 1624 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 88 1201 - -
Car03g02482 1624 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1251 1617 - -
Car03g02482 1624 SMART chromo_7 230 306 IPR000953 -
Car03g02482 1624 SMART chromo_7 164 223 IPR000953 -
Car03g02482 1624 Pfam Chromo (CHRromatin Organisation MOdifier) domain 167 221 IPR023780 -
Car03g02482 1624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 162 IPR013083 -
Car03g02482 1624 SUPERFAMILY Chromo domain-like 124 224 IPR016197 -
Car03g02482 1624 SUPERFAMILY Chromo domain-like 259 302 IPR016197 -
Car03g02482 1624 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 88 1201 - -
Car03g02482 1624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 791 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02482 Car-Chr3 70621451 70638700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02482 105 167 PHD Transcription Factor Family AT4G14920 39.683 8.64e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car03g02482 SNF2_N 2.8e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02482 - K11643 gmx:100813574 1612.43