Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02476 ATGGCTAAAGACATTCAAACCGAACCTCAAACTGCTTTGCCAAACAAAGACTACCAAGATCCACCACCTGCTCCACTCTTCGACACCTCTGAACTCTCCCAGTGGTCTTTCTACAGAGCTCTCATCGCCGAGTTCGTTGCCACTCTCCTCTTCCTCTACGTCACCGTCGCCACTGTCATTGGCTACAACTCTCAAACCGACCCAGCTCATAACGGCACCGCCTGTGACGGTGTCGGCATCCTCGGCATCGCTTGGGCCTTCGGTGGCATGATTTTTGTCCTTGTCTACTGCACCGCCGGCATATCTGGGGGACACATAAATCCGGCGGTGACATTTGGGTTGTTTCTGGCGAGAAAGGTATCGTTGATTAGAGCAATATTATACATGGTGGTTCAATGTTTAGGAGCAATATGTGGTGTTGGGTTAGTAAAAGGTTTTCAGAAAAGTTACTACAATAGGTACAAAGGTGGTGCAAATATGTTATCTAATGGGTACAGTAAGGGAACAGGGTTAGGTGCTGAGATCATTGGAACCTTTTTTCTTGTCTACACCGTTTTCTCTGCCACTGATCCTAAGAGAAATGCTAGAGACTCTCATGTTCCCGTTTTGGCACCACTTCCAATTGGTTTTGCTGTGTTTGTGGTTCACCTTGCTACTATTCCTATCACTGGAACTGGTATCAACCCTGCTAGAAGCCTTGGAGCTGCTGTCATATACAACAATCACAAGGCATGGGATCACCATTGGATATTCTGGGTTGGACCCTTTATTGGTGCTGCCATTGCTGCAATTTACCACCAGTTTGTGTTGAGAGCACAAGCGGCAAAGGCTTTGGGTTCTTTCAAGAGTTCTTCAAACCTTTAA 864 0.4676 MAKDIQTEPQTALPNKDYQDPPPAPLFDTSELSQWSFYRALIAEFVATLLFLYVTVATVIGYNSQTDPAHNGTACDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVVQCLGAICGVGLVKGFQKSYYNRYKGGANMLSNGYSKGTGLGAEIIGTFFLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFVVHLATIPITGTGINPARSLGAAVIYNNHKAWDHHWIFWVGPFIGAAIAAIYHQFVLRAQAAKALGSFKSSSNL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02476 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 284 IPR034294 -
Car03g02476 287 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g02476 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Car03g02476 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Car03g02476 287 PANTHER AQUAPORIN PIP2-4-RELATED 1 284 - -
Car03g02476 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g02476 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g02476 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g02476 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g02476 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g02476 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g02476 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g02476 287 MobiDBLite consensus disorder prediction 1 22 - -
Car03g02476 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g02476 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02476 Car-Chr3 70532133 70534078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02476 1 287 Major Intrinsic Protein MIP AT3G54820 78.397 1.18e-169 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02476 K09872 - cit:102608729 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02476 03 70532133 70534078 Car04g00995 04 10064554 10068219 ECH
Car03g02476 03 70532133 70534078 Car03g02476 03 70532133 70534078 ECH
Car03g02476 03 70532133 70534078 Car06g03485 06 65717405 65719511 ECH
Car03g02476 03 70532133 70534078 Car01g02496 01 50667013 50668878 ECH