Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02461 ATGGCCAACGACTCGTCGTTTTTATTCTCCGGCATTCGTTTTGATAGAAAGAAATTCGGTGCCGATATTGCCAGGTTCCAGAAAAAAGATACGGATAATAGTTTGGCGAAGATTCAGAGTGTGGCAGAAGATGAAGAAAGTGAGGAAACAAAAGAAGCTGTGTCTGCAAAGAAGAGGAAGCGCAAGAGAACCTCTTCTGAAGCGGTTGAAGGATTCAGTGTGTTCCGAACTTCCACATCCAAGTCAAACGATGAAATTCAAGCTGATGATGATGAGTCCATTCGGCTGAAGAAAGAACAAAATAAGCAACTTGAGCGTGATGCTCTCTTCAGGAAGAATCATAACATTCATGTCTCTGGATACAATGTGCCGTCCCCACTTCAAAGCTTTGATGAGTTGAAAACAAGATATAAATGTCCATCATATCTGTTGCGGAATCTGAGAGAACTTGGATTCAGAGAACCAACACCAATCCAACGGCAGGCTATTCCAGTACTCTTACATGGTCGTGAATGCTTTGCTTGTGCCCCAACTGGCTCTGGAAAAACCCTTGCATTTGTGTGTCCCATGCTCATGAAGCTCAAGGTTCATGCAAAAGGTGGCATTCGAGCTGTTATCATTTGTCATAGCCGTGAATTATCTACTCAAACATATCGAGAGTGCAAAAAGCTTGCCAAGGGGAAGAAGTTTCATATCAAGTTAATGACAAAAAATCTTTTAAGAAATGCTGATTTTTCAAAATTTTCTTGTGACATACTTATATCCACGCCACTTCGATTACGCTTGGCTATCCGAAAGAAAAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAATCCGATAAGCTATTTGAGCCTGGATTGTTCAAGCAGATTGATTCTATCATCAAAGCATGCTCAAATCCCTCAATAATACGCTCTCTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATCGTTGGCAGGAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCACCAGTGTTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGGGAACTTGCATTTGACAATATTAGAGTTGATGTCATCCATTCAGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTGGTAAAACATGGGTTTTGATTGCCACTGATGTGGTTGCTCGGGGAATGGACTTCAAAGGCATTAACTGTGTGATCAATTATGATTTTCCAGATTCTGCATCGGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAATGGCGAAGCAATTACATTTTACACAGAGGAGGACATTCCATTCCTGAGGAATGTAGCTAATCTTATGTCATCTTCAGGCTGTGAGGTTCCATCGTGGTTGATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCCATCTCAACCAAGCCAGATCTGTAA 1578 0.4189 MANDSSFLFSGIRFDRKKFGADIARFQKKDTDNSLAKIQSVAEDEESEETKEAVSAKKRKRKRTSSEAVEGFSVFRTSTSKSNDEIQADDDESIRLKKEQNKQLERDALFRKNHNIHVSGYNVPSPLQSFDELKTRYKCPSYLLRNLRELGFREPTPIQRQAIPVLLHGRECFACAPTGSGKTLAFVCPMLMKLKVHAKGGIRAVIICHSRELSTQTYRECKKLAKGKKFHIKLMTKNLLRNADFSKFSCDILISTPLRLRLAIRKKKIDLSRVEYLVLDESDKLFEPGLFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFVQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYVHRIGRSGRAGRNGEAITFYTEEDIPFLRNVANLMSSSGCEVPSWLMELQKKKWKKHRPKRDSISTKPDL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02461 525 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 505 IPR001650 -
Car03g02461 525 Gene3D - 333 510 IPR027417 -
Car03g02461 525 MobiDBLite consensus disorder prediction 40 68 - -
Car03g02461 525 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 132 160 IPR014014 GO:0003724
Car03g02461 525 Pfam DEAD/DEAH box helicase 156 320 IPR011545 GO:0003676|GO:0005524
Car03g02461 525 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 333 IPR014001 -
Car03g02461 525 SMART ultradead3 151 348 IPR014001 -
Car03g02461 525 MobiDBLite consensus disorder prediction 40 55 - -
Car03g02461 525 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 522 - -
Car03g02461 525 CDD DEADc_DDX52 143 336 IPR044764 GO:0003724|GO:0005524|GO:0030490
Car03g02461 525 CDD SF2_C_DEAD 345 475 - -
Car03g02461 525 Pfam Helicase conserved C-terminal domain 363 466 IPR001650 -
Car03g02461 525 Gene3D - 74 332 IPR027417 -
Car03g02461 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 478 IPR027417 -
Car03g02461 525 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 522 - -
Car03g02461 525 SMART helicmild6 385 466 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02461 Car-Chr3 70405221 70411426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02461 126 504 Eukaryotic Initiation Factors Gene Family AT3G19760 30.184 1.33e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02461 K14779 - gmx:100800969 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02461 03 70405221 70411426 Car03g02461 03 70405221 70411426 ECH