Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02455 ATGGGAAAGACACGAGGAATGGGAGCTGCCCGCAAGCTTAGGAAGCACCGTATTAAGCAACGGTGGGCAGATAAGCAATATAAAAAATCTCATCTTGGTAATGAATGGAAAAAGCCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAATGTGCCAGGGTTCAACTCATCAAAAATGGGAAGAAGATAGCTGCCTTTGTTCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTTTTGATAGCTGGATTTGGACGTAAAGGTCATGCTGTGGGTGATATTCCTGGTGTCAGATTCAAGGTTGTGAAGGTTTCTGGTGTCTCTCTACTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAATGTGCCAGGGTTCAACTCATCAAAAATGGGAAGAAGATAGCTGCCTTTGTTCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTTTTGATAGCTGGATTTGGACGTAAAGGTCATGCTGTGGGTGATATTCCTGGTGTCAGATTCAAGGTTGTGAAGGTTTCTGGTGTCTCTCTACTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTAG 690 0.4304 MGKTRGMGAARKLRKHRIKQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02455 229 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Car03g02455 229 CDD Ribosomal_S12_like 142 223 - -
Car03g02455 229 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g02455 229 Pfam Ribosomal protein S12/S23 142 228 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g02455 229 SUPERFAMILY Nucleic acid-binding proteins 141 227 IPR012340 -
Car03g02455 229 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Car03g02455 229 ProSitePatterns Ribosomal protein S12 signature. 146 153 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g02455 229 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 142 229 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g02455 229 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g02455 229 Gene3D - 25 141 IPR012340 -
Car03g02455 229 Gene3D - 142 229 IPR012340 -
Car03g02455 229 TIGRFAM uS12_E_A: ribosomal protein uS12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Car03g02455 229 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Car03g02455 229 PANTHER BNACNNG03140D PROTEIN 142 229 - -
Car03g02455 229 PANTHER BNACNNG03140D PROTEIN 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02455 Car-Chr3 70360044 70363434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02455 142 229 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 100.000 1.77e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02455 K02973 - ini:109163307 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02455 03 70360044 70363434 Car04g01840 04 19607484 19609226 ECH
Car03g02455 03 70360044 70363434 Car03g02455 03 70360044 70363434 ECH
Car03g02455 03 70360044 70363434 Car06g03521 06 66214893 66217125 ECH
Car03g02455 03 70360044 70363434 Car04g01840 04 19607484 19609226 PCT