Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02452 ATGCACAGAACTGCAGAAGAGACGGAGCAGAGGATCCGACATCGATTCGGATCCTTTCCCATGGATTCATCGCAGTTAATGGACATTTACTTTCCTCAGCAACTCTTCACTATCGAACAAACCTGGCTCAATCTCACAGCTTCTCTTTTTTCCTTCTTTTCTTCCTCCCAAGGCCAAAACATCGATTCCCAGGTGAAAAATGATTATGGAAACTATGTATTGTCACTTGATTTTCAGCAGCTCAAAAATATGTGTCATGTTGAGGAATTTTATGAAATGTTACTGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGCTGCCGTTCACAAGGTTTTGCTTTCTAAATGGGATAATGACAAGCTGGAGCTTGCTGCAAAAGTAGACATCCGTCTTCATAACTGTCCTGAAACCATGATCGCACTGAAGAACCTAAAAGCAGCTTACATTGACAAGCTTGTCTCAGTGCGTGGAACCGCTGTGAAAGTCAGCACCGTCAGGCCTCTTGTGGTAGAAATGAGTTTTGAATGCTTTAAGTGCAAACAAGGAATAACACGTATATTTCCTGATGGAAAATTTTCACCGCCATCAACTTGCAATTTGAATGGTTGCAAGAGCAAAATCTTCAATCCTTTGCGATCTACTGCTCAAACTATTGATTTTCAGAAAATAAGGGTTCAAGAATTATTAAAACATGAAGATCACGAGGAAGGACGAGTACCTCGAACAGTGGAATGCGAACTTACCCAAGACCTTGTTGATGCATGCATTCCTGGAGATGTGGTGACTGTCACTGGAATTATCAGAGGAATTAACAATTACATGGATATTGGAGGAGGGAAGTCAAAGAACAGAAACCAAGGATTTTACTATTTGTATCTTGAAGCTGTATCCATAATAAATTCAAAGTCACAGTCCATACCTGAGGATTCACAAGACTCTAATGCCAAAGCTAGACCAACTGAGCTGTTTAATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGCAGAGGAGCATGGTTCAGATTTATTTCGGCAAATCCTTCACTCTATATGCCCATCTATCTATGGGCACGAGCTTGTTAAAGCTGGGATAACTCTATCATTATTTGGTGGTGTACGAAAGCATTCTATGGATCAGAATAAGGTTCCTGTGAGAGGAGATATTCATGTTATAATTGTAGGTGATCCTGGTCTAGGTAAGAGCCAGTTGTTACAAGCAGCAGCAGCTGTTTCGCCACGTGGTATATATGTCTGCGGTAACGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGCATTGATGAGTTTGATAAAATGTCATCAGAGCATCAGGCTTTACTTGAGGCAATGGAGCAACAGTGTGTATCTATTGCAAAGGCGGGATTGGTAGCAAGTTTATCATCCCGAACTTCTGTCTTAGCGGCTGCAAATCCTGTTGGCGGTCATTATAACCGGGCAAAAACTGTAAATGAAAATTTAAAAATGAGTGCTGCACTATTGTCCCGTTTTGATTTAATTTTCATATTGCTGGACAAGCCTGATGAACTTCTGGACAAGCGAGTCTCAGAGCACATTATGTCCCTTCATGCTGGGCAACACTCACAGGCATCTAAAAAGCAGCGTAGAGATCCACCTTCTGATTCAAGAGCTTCTGCATCACAGAATGCTGAAGAGGTAGATTTCGGTGTTAGATCTGGTTCTTTAATTTCAAGGTTGAAACTTGACCGACGAAGAGACAGTGATTTTGTTCCATTACCCGGTCAACTACTTCGCAAATACATTGCTTATGCCAGGAGTTTTGTCTTTCCTAGGATGTCCAAGCCAGCAGCAGATATCATACAAAAGTTTTACCTAAAACTTAGAGATCATAACATTTCGGCCGATGGTACTCCTATAACAGCAAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGTGCTCGGCTCGACTTGAGAGTAGAAATAACGGCCCAGGATGCAATGgatgttgttgaaatcatgaagGAATCACTGTATGATAAATATGTTGATGAGCATGGTGTCGTAGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCAAAACGCTTTCTAAATGCCCTCAATAAGCAATCGGAGTTGGAACAGAAAGATTGCTTTTCAGTATCTGAAATATACAGTCTGGCAGATAGGATTTCCTTGAAAGTACCTGATATTGATACTTTCATCGATAATTTGAACAGTGTTGGTTATCTACTCAAAAAAGGACCAAAGACCTACCAGGTGTTATCCTCTTCTTACGCACGGAGCCAATCGTCTAGGTCAAGGGGATAA 2412 0.4117 MHRTAEETEQRIRHRFGSFPMDSSQLMDIYFPQQLFTIEQTWLNLTASLFSFFSSSQGQNIDSQVKNDYGNYVLSLDFQQLKNMCHVEEFYEMLLEKPKIALLCMSAAVHKVLLSKWDNDKLELAAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECFKCKQGITRIFPDGKFSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINNYMDIGGGKSKNRNQGFYYLYLEAVSIINSKSQSIPEDSQDSNAKARPTELFNLFSFSSKDLEFVVKFAEEHGSDLFRQILHSICPSIYGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRVSEHIMSLHAGQHSQASKKQRRDPPSDSRASASQNAEEVDFGVRSGSLISRLKLDRRRDSDFVPLPGQLLRKYIAYARSFVFPRMSKPAADIIQKFYLKLRDHNISADGTPITARQLESLVRLAEARARLDLRVEITAQDAMDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRISLKVPDIDTFIDNLNSVGYLLKKGPKTYQVLSSSYARSQSSRSRG 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02452 803 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 19 798 IPR031327 GO:0003677|GO:0005524|GO:0032508
Car03g02452 803 Coils Coil 463 483 - -
Car03g02452 803 Pfam MCM AAA-lid domain 619 702 IPR041562 -
Car03g02452 803 MobiDBLite consensus disorder prediction 558 588 - -
Car03g02452 803 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car03g02452 803 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car03g02452 803 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car03g02452 803 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car03g02452 803 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 537 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car03g02452 803 Gene3D - 169 219 - -
Car03g02452 803 Gene3D - 142 271 IPR012340 -
Car03g02452 803 SMART mcm 138 703 IPR031327 GO:0003677|GO:0005524|GO:0032508
Car03g02452 803 SMART AAA_5 392 544 IPR003593 -
Car03g02452 803 SUPERFAMILY Nucleic acid-binding proteins 69 272 IPR012340 -
Car03g02452 803 Pfam MCM P-loop domain 346 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car03g02452 803 ProSiteProfiles MCM family domain profile. 348 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car03g02452 803 CDD MCM8 352 701 - -
Car03g02452 803 Gene3D - 326 712 IPR027417 -
Car03g02452 803 Pfam MCM OB domain 142 270 IPR033762 -
Car03g02452 803 PANTHER DNA HELICASE MCM8 19 798 - -
Car03g02452 803 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 708 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02452 Car-Chr3 70339050 70346844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02452 36 789 Core DNA Replication Machinery Family AT3G09660 73.976 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02452 K10737 - gmx:100784549 1319.68