Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02419 ATGGCAATGAAGAGACAGAGAAACAGCCAAGGAACAGAGAACATAAATATATCAAATTGTCTGATGCTACTTTCTTGTCCACAACAAAAAAACTACGAAAATGGGGAATACGAATGCAAAACATGCAACAAAAAATTCTCATGTTTTCAAGCCCTTGGTGGACACAGGGCTAGTCACAAGAGAATGAAAGTAATTGATGGAGAAGAACTGAAAGAAGAAGCTAAATCTCTTAGTTTATGGAATGAACCAAAAATGCACGAGTGTTCTATTTGTGGTATGAGATTCTCTTTGGGTCAAGCATTAGGAGGACACATGCGAAAACATAGAGCTGCAACAAATGAAGGCTTATCTTCTATGAAACAAATGATTGCGAAAATTCCAATTTTGAAGAGATCGAATAGTAAGAGGATTATGTGTTTGGACTTGAATTTGACACCTCTAGAGAATGACTTAGCGTTTGGAATGAAGTCACCCCCACTTCCACTTTCTTTGTTTTGA 498 0.3715 MAMKRQRNSQGTENINISNCLMLLSCPQQKNYENGEYECKTCNKKFSCFQALGGHRASHKRMKVIDGEELKEEAKSLSLWNEPKMHECSICGMRFSLGQALGGHMRKHRAATNEGLSSMKQMIAKIPILKRSNSKRIMCLDLNLTPLENDLAFGMKSPPLPLSLF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02419 165 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Car03g02419 165 Gene3D Classic Zinc Finger 34 108 - -
Car03g02419 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Car03g02419 165 PANTHER ZINC FINGER PROTEIN ZAT5 3 157 - -
Car03g02419 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Car03g02419 165 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 157 - -
Car03g02419 165 SMART c2h2final6 37 59 IPR013087 -
Car03g02419 165 SMART c2h2final6 86 108 IPR013087 -
Car03g02419 165 Pfam C2H2-type zinc finger 37 60 - -
Car03g02419 165 Pfam C2H2-type zinc finger 86 110 - -
Car03g02419 165 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Car03g02419 165 SUPERFAMILY beta-beta-alpha zinc fingers 37 108 IPR036236 -
Car03g02419 165 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02419 Car-Chr3 70093117 70093909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02419 3 153 C2H2 Transcription Factor Family AT2G37430 44.848 3.66e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car03g02419 zf-C2H2_6 2.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02419 - - aprc:113870747 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02419 03 70093117 70093909 Car04g00019 04 219275 219885 PCT