Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02418 ATGAAGAGGCAAAGAGATATCGAAGGTTTAGAAAACATAAATTTGGCAAATTGTTTAATGATGCTCTCTTATCCCCCAAAACAACAAAACAATAAACCAAAGCAAATAAAATTTGGGCCTACGGAATTTGAGTGCAAAACTTGCAACCGAAAATTCTCATCTTTTCAAGCACTCGGTGGCCATAGAGCTAGTCATAAAAGATCAAAATTAGAAGGGTATGAACTTATAAAAGCTAATGCTATATCTTTGAGTTTGGGAAATAAACCAAAAATGCACGAATGCTCCATTTGTGGACAGGAATTTTCTTTGGGGCAAGCACTTGGTGGACACATGAGAAGGCATAAAGCTATGCTCATCAACAAACAACTTTCTTCGATAGAAAAAGTTGATGTGAAAATACCAATTTTGAAGAGATGGAATAGCATGAGGGTTATGTGCATGGACTTGAACTTGACACCGTTGGAGAATGATTTGAAGTTATTGTTTGGAAATATGGCTCCAAATCTTGATGTTTTAGTCTGA 522 0.3602 MKRQRDIEGLENINLANCLMMLSYPPKQQNNKPKQIKFGPTEFECKTCNRKFSSFQALGGHRASHKRSKLEGYELIKANAISLSLGNKPKMHECSICGQEFSLGQALGGHMRRHKAMLINKQLSSIEKVDVKIPILKRWNSMRVMCMDLNLTPLENDLKLLFGNMAPNLDVLV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02418 173 SUPERFAMILY beta-beta-alpha zinc fingers 43 114 IPR036236 -
Car03g02418 173 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Car03g02418 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Car03g02418 173 Gene3D Classic Zinc Finger 40 114 - -
Car03g02418 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Car03g02418 173 SMART c2h2final6 92 114 IPR013087 -
Car03g02418 173 SMART c2h2final6 43 65 IPR013087 -
Car03g02418 173 PANTHER ZINC FINGER PROTEIN ZAT5 1 167 - -
Car03g02418 173 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Car03g02418 173 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 167 - -
Car03g02418 173 Pfam C2H2-type zinc finger 43 67 - -
Car03g02418 173 Pfam C2H2-type zinc finger 92 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02418 Car-Chr3 70087691 70088402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02418 1 171 C2H2 Transcription Factor Family AT2G37430 46.154 3.90e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car03g02418 zf-C2H2_6 3.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02418 - - gmx:100806997 245.743