Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g02409 | ATGCACCTGTCAACCGAGAAAGCTGAACAAGCCCGTAGCCAGGCTCAAGCATTGGAAGAAGCCCTTGATGTTGATGACTTAGAGGCTGATAAAAGGCCGGAGGACTTGATGCTGAGCTATGTCAGTGGTGAGAAAGGAAAGGACAGATCTGACAGGGAGCTTGTTACCCCGTGGTTTAAATTTCTTTGGGAAACTTACAGGACTGTGCTTGAAATATTGCGGAACAACTCAAATTTGGAAGCCTTATATGCGATGACAGCCCATCGAGCTTTCCAGTTTTGTAAGCAGTATAAACGAACAACGGAATTTCGAAGACTCTGTGAAATCATCCGAAACCATTTGGCTAATCTTAACAAATATCGGGACCAACGAGACCGTCCTGATCTTTCTGCTCCTGAAAGCATGCAATTGTATCTTGATACAAGATTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCTTTCCGATCCGTTGAAGATATACATGGACTAATGTGCATGGTCAAGAAAACACCGAAACCATCCTTGATGGTGGTTTACTATGTTAAGTTGACCGAAATATTTTGGAAATCATCCAGTCATTTATACCATGCATATGCTTGGTTCAAGCTATTTTTGTTACAAAAGACCTTCAACAAGAATCTGAGTCAGAAGGATTTGCAATTAATAGCTTCTTCCGTTGTTCTAGCTGCGCTTTCAGTTCCTCCTCATGATCATACTCATGGTGCCTCTCATTTAGAACTAGAGCATGAAAAGGAGCGAAATTTGAGGATGGCAAATCTCATAGGCTTTAATCTTGAAACCAAGCCTGAGAGCAGAGAAGTGGTACGTTACTTCATTTGCACTATTGTGGTAGCATCAAAGGGTGTAATGTCATGTGTTGCTCAAGAAATTAAGGACATTTACTATCTTTTGGAACACGAGTTTCTACCCGCGGATCTTGCACTTAAAGTACAACCCTTGCTAAACAAAATTGCTAAATTAGGGGGTAAGTTTTCCTTTGCATCATCTGTTCCAGAGGTGCAATTGTCGCAGTATGTACCAGCACTTGAGAAGTTAGCTACCTTGAGGTTGTTACAACAGGTATCTAATGTGTACCAGACAATGAAGATTGAGAACTTAGCTGGGATGATCCCCTTCTTTGATTTTTCCATAGTCGAAAAGATTTCTGTGGATGCTGTTAAGCAGAAATTTCTATCCATGAAAGTTGACCACATGAAAAATGTTATAATTTTCTGTATGACGAGTCTTGAGGCTGATGGCTTAAGGGATCACTTGGCCAGTTTTGCTGAACAATTGAATAAGGCAATACAAATGATTTGTCCTCCGGATAGGAAACAATCAAAACTTGGAACTATGCTCCCGGCTTTGTCAGAGCTTCTTGAAATGGAACGCGAGGAGGAATCAAAGAGGTTAAGGCTGCAGAAAATTACAGAAGAAGCAGAGCAAAGGAGGCTTGCAACTGAGTACGAGCAGAGGAAGAATCAAAGGATTCTCAGGGAAATTGAGGAAAGAGAAAATGAAGAGGCTCAGGCTTTACTTCAGGAAGCTGAAAAGCCTATTAAGAAAAAGGGTAAAAAGCCCATCATTGAGGGGGAGAAAATTACTAAACAGACCTTAATGGAATTGACTTTGACTGAACAACTCCGGGAAAGGCAGGAAATGGAGAAGAAACTGCAGAAATTTGCCAAAACCATGGATTATTTGGAAAGGGCAAAGAGAGAAGAGGCTGCTCCACTTATTGAAGCTGCATATCAACAGCGTCTTGTGGAAGAGAGGATTCTTCATGAGCGTGAGCAACAGCGCCATGCTGGAGATATCAGTGAGAAGCAGAGGCTTATTCGAATGATGGGCAATAAAGAGATATTTCAAGAGAGAGTTGTCAATCATCGCCAAGCGGAATTTAATAGACTGAGGAAAGAAAGGGAGGAACCTCTGAGGCCTCATGAGCCTCCTGCCCGTCCATTGGAGTCTGGGTctgctgctcctgctgcagctgccgcttctgcagcCCCAACTCCAGGGAAATATGTCCCTAAGTTCCGTCGAGAAAGAGTTGAAAGCTCAGGAGCTGCTCCTCCTCCGGAAGCAGATCGTTGGGGTAACAGTAGCAGTAGGGCAGATGGTGACAGATGGGGTGAGCGCAAATCCTCATTTGGATGTGTTTCTTTTCTCTCTTGGAAATAA | 2199 | 0.4206 | MHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSNLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESMQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWKSSSHLYHAYAWFKLFLLQKTFNKNLSQKDLQLIASSVVLAALSVPPHDHTHGASHLELEHEKERNLRMANLIGFNLETKPESREVVRYFICTIVVASKGVMSCVAQEIKDIYYLLEHEFLPADLALKVQPLLNKIAKLGGKFSFASSVPEVQLSQYVPALEKLATLRLLQQVSNVYQTMKIENLAGMIPFFDFSIVEKISVDAVKQKFLSMKVDHMKNVIIFCMTSLEADGLRDHLASFAEQLNKAIQMICPPDRKQSKLGTMLPALSELLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEERENEEAQALLQEAEKPIKKKGKKPIIEGEKITKQTLMELTLTEQLRERQEMEKKLQKFAKTMDYLERAKREEAAPLIEAAYQQRLVEERILHEREQQRHAGDISEKQRLIRMMGNKEIFQERVVNHRQAEFNRLRKEREEPLRPHEPPARPLESGSAAPAAAAASAAPTPGKYVPKFRRERVESSGAAPPPEADRWGNSSSRADGDRWGERKSSFGCVSFLSWK | 732 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g02409 | 732 | Pfam | PCI domain | 339 | 416 | IPR000717 | - | |
| Car03g02409 | 732 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Car03g02409 | 732 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 1 | 466 | - | - | |
| Car03g02409 | 732 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 658 | 691 | - | - | |
| Car03g02409 | 732 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 463 | 649 | - | - | |
| Car03g02409 | 732 | Coils | Coil | 549 | 576 | - | - | |
| Car03g02409 | 732 | MobiDBLite | consensus disorder prediction | 642 | 720 | - | - | |
| Car03g02409 | 732 | Coils | Coil | 497 | 524 | - | - | |
| Car03g02409 | 732 | ProSiteProfiles | PCI domain profile. | 201 | 421 | IPR000717 | - | |
| Car03g02409 | 732 | SMART | PINT_4 | 349 | 440 | IPR000717 | - | |
| Car03g02409 | 732 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 1 | 466 | IPR027512 | GO:0005852 | |
| Car03g02409 | 732 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 658 | 691 | IPR027512 | GO:0005852 | |
| Car03g02409 | 732 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 463 | 649 | IPR027512 | GO:0005852 | |
| Car03g02409 | 732 | Gene3D | UVR domain | 125 | 176 | - | - | |
| Car03g02409 | 732 | Coils | Coil | 1 | 28 | - | - | |
| Car03g02409 | 732 | Gene3D | - | 177 | 250 | - | - | |
| Car03g02409 | 732 | Gene3D | - | 272 | 416 | - | - | |
| Car03g02409 | 732 | Coils | Coil | 464 | 484 | - | - | |
| Car03g02409 | 732 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 349 | 440 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car03g02409 | Car-Chr3 | 70014015 | 70018903 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car03g02409 | 1 | 648 | Eukaryotic Initiation Factors Gene Family | AT4G11420 | 71.701 | 0.0 | 956 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g02409 | K03254 | - | gmx:100803796 | 1023.46 |