Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02408 ATGGCATTTCTGTCTGGATTTCAGCGTTTGATTCGCCACACACCACTTcttaactcccacttcacttcaattcgtctcaattcaactctcacttcCCCCAAACTTTTCGTTAGCGGTCTTTCGAGACTGACAACAGATGAAAAGCTTACTGAAGCATTTTCTCCTTTTGGGCAGCTAACTGAAGCTAAGGTGATAATTGACAGAGCTTCTGGAAGATCAAAGGGTTTCGCGTTTGTATCTTACGCAACCGTAGAAGAAGCTGAAAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCTAAACCAAGAGAACCAAGACCTCCTCCGCAATCACAATCTGAGCAGCCTCAAACAGGTTTCACGGTTAATAAGACTGTCGGGTGGTGTGGTTGA 420 0.3881 MAFLSGFQRLIRHTPLLNSHFTSIRLNSTLTSPKLFVSGLSRLTTDEKLTEAFSPFGQLTEAKVIIDRASGRSKGFAFVSYATVEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQSQSEQPQTGFTVNKTVGWCG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02408 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Car03g02408 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
Car03g02408 139 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 139 - -
Car03g02408 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Car03g02408 139 MobiDBLite consensus disorder prediction 109 131 - -
Car03g02408 139 SUPERFAMILY RNA-binding domain, RBD 32 132 IPR035979 GO:0003676
Car03g02408 139 PANTHER NUCLEOLAR PROTEIN 8 1 139 - -
Car03g02408 139 Gene3D - 25 133 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02408 Car-Chr3 70011937 70013676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02408 35 126 Eukaryotic Initiation Factors Gene Family AT3G16380 36.957 8.01e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02408 - - gmx:100306326 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02408 03 70011937 70013676 Car03g02408 03 70011937 70013676 ECH