Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02392 ATGGATCAACAACAATACCCAATACCTCGCCCTAACAAACCCTCCATTGCAGACGACGAGATCATGGAGCTCTTATGGCAAAACGGCCAAGTCGTCACACAGACTCAAAACCACCGTTATCTCAGAAAACCACCGCCAGGGACCGATTCCACTCGCGGCGGAACTTTATCGGCGAAGGAGGAAAACTATAATCAACATCTATTCATGCAAGAAGGTGAAATGGCTTCGTGGCTTCACTATCCAATCAACGATGATGACGATTCTCCCTTCGATCAAACCTTCTCTGCCGATTTCCTCAACCCGCCGCCGACGGTTAACAACAACCGTATCATGCAAAATCCTCACCACACGTCTCAACTGACGGAGCTCCGGCAGACTCCAATGTCGGCGGTTCCTCCTCGTCCTCCGATTCCGCCGCCGAGGAAGCTCGATCAAGTGCCGCAGAACTTTGCGTACTTTGCGAGGCACAGTGTTAGGACAGAGCCAGGACCGTCTTCGATTTCGAGAACTGCTGTGAATGAATCAACGGGGGTAGATTCGTGCGACACGCCTGCTGTGCAACCGGTTTCGGAAACAGTTAGAAGTTCGGCGGAGCTAACGGAAGGAGGAACCGGTTTGGAGGCGCCTTCTATGACGTGTGATGAACCGGGCGGTTCGAGTAGTAGTGGAGAagcggttcggaaggtagcggagcaggagcgaaagaggaagggaagggaagcggaggaATGGGAGGATCAAAGCGAGGATGTTGATTTTGAATCTGCGGAAGCCAAAAGAAATATCTGTGGATCATCATCATCTGTAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCCGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAAAGCTCTTCAAGAACTGATACCTCGATGTAATAAGTCTGACAAAGCTTCTATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGAGAGTACAACTTATGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCGTGGAATTCAGCAGTATATGCCAACaattggaatgggaatggggatgagtatggaaatgggaatgAACAGACCGGTAATGCCATTTCCCAATATGTTAACCGGTCTGGCTTTGCCTGCAGCTGCTGCTGCTCATTTGGGACCAAGGTTTCCTATGCCTCCTTTCCACGTGCCGCAAGTTCCTACACCTGATTCATCTAGAACACAAGCAGCTAATCAGTCAGATGTTAATGTGCTCACCTCAGTTGGAACACCTGATCCAAATCATTCATGCATTCCAAACTTCACCGATCCTTATCAACAATACCTTGGTCCCCACCAGATGCAGTTTCAATTAATGCAGAATCAGGCAATAAACCAACCAAACAATAACAAGCCAGGTATCAGTAGGCCCCCTGAGAATCCTGAAACGCGCCAGTCAGGAGATAAATGA 1470 0.4517 MDQQQYPIPRPNKPSIADDEIMELLWQNGQVVTQTQNHRYLRKPPPGTDSTRGGTLSAKEENYNQHLFMQEGEMASWLHYPINDDDDSPFDQTFSADFLNPPPTVNNNRIMQNPHHTSQLTELRQTPMSAVPPRPPIPPPRKLDQVPQNFAYFARHSVRTEPGPSSISRTAVNESTGVDSCDTPAVQPVSETVRSSAELTEGGTGLEAPSMTCDEPGGSSSSGEAVRKVAEQERKRKGREAEEWEDQSEDVDFESAEAKRNICGSSSSVKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQRVQLMQMMSMGCGMVPMMFRGIQQYMPTIGMGMGMSMEMGMNRPVMPFPNMLTGLALPAAAAAHLGPRFPMPPFHVPQVPTPDSSRTQAANQSDVNVLTSVGTPDPNHSCIPNFTDPYQQYLGPHQMQFQLMQNQAINQPNNNKPGISRPPENPETRQSGDK 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02392 489 CDD bHLH_AtPIF_like 273 342 - -
Car03g02392 489 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 271 331 IPR036638 GO:0046983
Car03g02392 489 MobiDBLite consensus disorder prediction 158 281 - -
Car03g02392 489 MobiDBLite consensus disorder prediction 227 244 - -
Car03g02392 489 MobiDBLite consensus disorder prediction 34 56 - -
Car03g02392 489 Gene3D - 269 334 IPR036638 GO:0046983
Car03g02392 489 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 487 - -
Car03g02392 489 SMART finulus 279 328 IPR011598 GO:0046983
Car03g02392 489 Coils Coil 279 299 - -
Car03g02392 489 Coils Coil 227 247 - -
Car03g02392 489 Pfam Helix-loop-helix DNA-binding domain 277 323 IPR011598 GO:0046983
Car03g02392 489 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 5 487 IPR031066 -
Car03g02392 489 MobiDBLite consensus disorder prediction 463 481 - -
Car03g02392 489 MobiDBLite consensus disorder prediction 260 274 - -
Car03g02392 489 MobiDBLite consensus disorder prediction 161 199 - -
Car03g02392 489 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 322 IPR011598 GO:0046983
Car03g02392 489 MobiDBLite consensus disorder prediction 463 489 - -
Car03g02392 489 MobiDBLite consensus disorder prediction 400 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02392 Car-Chr3 69863263 69868662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02392 8 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.698 3.50e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g02392 HLH 5.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02392 - - gmx:100797225 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02392 03 69863263 69868662 Car03g02392 03 69863263 69868662 ECH
Car03g02392 03 69863263 69868662 Car04g00048 04 510571 517923 PCT