Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02356 ATGGCACCGAATCCAAAAGTTATAGCGGCTTACCGTGCAATGTCGAGCCTGGGGATTCATGAATCCAAAGTGAAACCAGTATTGAAGAAACTGCTTAAATTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAATTATAGGGCTCTTGCTGATGCAATTTTTGATGATGATGAAAATAAGCTGATGAAATGTACTCAGGACAGGGAGGTAGATAATGAAGCTGCTGTGCACGAAGAGCCAGTGCGACCTTTGAAGAGGCTGCGTTTAAGAGGTCAAGAGGGTCAATCTTCACGCCTTCTGACTGGCCTTGGCCCCAGTTCAACTGCCTCTCCATTGATAACGCCTAGATCAGAATCTGGCACAGGACCCGGAAGTAGTTCTAGACTGCAGGATAACATTGTTGATAAGGGAAAGAAACCTGTATCACCTCAAGTTACTCTAAGAGGGAGAAGTTCTGTATCTGAGAGAACTCCACCTAGAGTGTTGTTTACAGAATCGGCAGTTGAACCAGGAGCTTCTCAGTTGTCAAATAGCAAAACACCTCATCCTTACCCTTTTATCACTCCCAAGGATGAACCTATTGATGAAATACCAGATTATGAGGTTCCGATTTCAATGATTCTTCCTGaaACAACTGGAAAGCATAATGGCAACAACACCGTGGCATTACAATGCAGAAACAAAAATGTTGACGGTGAAGATATTCTTCCTTCCTCTAATGAAGAAGCGACTTCTAATGCAGAGCTAGCCTCATCATCTATGGGAGAGGAAGCATCTGTAAAGATAACACCAACTGTTGGCCTTTCAGAGGAATCTGAGGAAAATGGTACGCTGATTGCCCGAGGAAATAAAGATTCTGCAATTCTTCCCCATGTTGCTAATGGATCAACCACTGTTAAGTCTACTCTTGCCTTGGTTTCACCTCAAGTTCCCGTACCCTGCCCAAGTGGTTTGGATGATGCTGTACTAGTTTCCAAGAAGGATGGTGTTTTATTGGAAAGTGATGGTGGGAAGGAGTTGGGGGATCATATACCTCAAAATTCATTCAATGTAATGAATGCTAGGAAGCACCAGCTAACAACTGATGATGCAAGGGCTGTTTGCACTTCCAATGACCTAACAAAGGGAGAAGAAAAAGTGAAAATTTCATGGGTGAATAATTCTGCCAATGATATCCCACCTTTGTTTCACTACATACCCCGAAACTTGGTGTTCCGAGATGCATATGTCAATATTTCTCTATCTCGTATTGGGAGTGAAGATTGTTGTTCTACTTGTATTGGAAATTGTGTCTTATCATCTAAACCATGTTTTTGTGCAAACAAAACTGGAGGGGACTTTGCCTACACTGCACAAGGTGTACTAAAGGAAGAGTTCTTGGAACAGTGTATTTCCATCAACCGAGACCCTCAAAATTATTCTTATTGCAAAGAATGTCCCCTTGAAATATCAAAGAGTGATGGTTGTTTGGAACCATGTAAAGGACACTTGAAAAGGAAATTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGGAGACATTGTGGCAATCGGATTGTCCAGCGTGGAATAACTTGCAATTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCTTTTGTATGCGAGTTTGTCGGAGAAATTTTAACTGTCAAAGAGTTGCATGAGAGGAACTTGAAATATCCCAAAAATGGGAAATATACGTACCCGATTTTATTGGATGCAGAATGGGACTCAGGAGTTGTAAAGGATAACCAAGCTCTTTGCTTATATGCAGCATCATATGGAAATGCCGCTAGGTTTATTAATCACAGATGTTTAGATGCAAACTTGATCGAGATCCCAGTTGAAGTTGAGGGTCCATCTCATCACTATTATCATTTTGCCTTCTTCACGTCCAGAAAAATAGCAGCACAGGAAGAGTTGACCTGGgattatggcatcaactttgatgacgatgatgagccagttgaactatttcAGTGCAAATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGAACCATTAGATAG 2082 0.4054 MAPNPKVIAAYRAMSSLGIHESKVKPVLKKLLKLYDKNWELIEEENYRALADAIFDDDENKLMKCTQDREVDNEAAVHEEPVRPLKRLRLRGQEGQSSRLLTGLGPSSTASPLITPRSESGTGPGSSSRLQDNIVDKGKKPVSPQVTLRGRSSVSERTPPRVLFTESAVEPGASQLSNSKTPHPYPFITPKDEPIDEIPDYEVPISMILPETTGKHNGNNTVALQCRNKNVDGEDILPSSNEEATSNAELASSSMGEEASVKITPTVGLSEESEENGTLIARGNKDSAILPHVANGSTTVKSTLALVSPQVPVPCPSGLDDAVLVSKKDGVLLESDGGKELGDHIPQNSFNVMNARKHQLTTDDARAVCTSNDLTKGEEKVKISWVNNSANDIPPLFHYIPRNLVFRDAYVNISLSRIGSEDCCSTCIGNCVLSSKPCFCANKTGGDFAYTAQGVLKEEFLEQCISINRDPQNYSYCKECPLEISKSDGCLEPCKGHLKRKFIKECWSKCGCGRHCGNRIVQRGITCNLQVFLTSDGKGWGLRTLEDLPKGAFVCEFVGEILTVKELHERNLKYPKNGKYTYPILLDAEWDSGVVKDNQALCLYAASYGNAARFINHRCLDANLIEIPVEVEGPSHHYYHFAFFTSRKIAAQEELTWDYGINFDDDDEPVELFQCKCGSKFCRNMKRSNRTIR 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02356 693 Gene3D SET domain 348 669 IPR046341 -
Car03g02356 693 SMART preset_2 371 511 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car03g02356 693 SUPERFAMILY SET domain 381 683 IPR046341 -
Car03g02356 693 MobiDBLite consensus disorder prediction 237 260 - -
Car03g02356 693 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Car03g02356 693 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 693 - -
Car03g02356 693 Pfam SET domain 539 660 IPR001214 GO:0005515
Car03g02356 693 MobiDBLite consensus disorder prediction 239 260 - -
Car03g02356 693 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 693 - -
Car03g02356 693 MobiDBLite consensus disorder prediction 73 93 - -
Car03g02356 693 MobiDBLite consensus disorder prediction 73 185 - -
Car03g02356 693 ProSiteProfiles SET domain profile. 527 660 IPR001214 GO:0005515
Car03g02356 693 ProSiteProfiles Pre-SET domain profile. 423 524 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car03g02356 693 SMART set_7 527 666 IPR001214 GO:0005515
Car03g02356 693 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 693 IPR025776 -
Car03g02356 693 MobiDBLite consensus disorder prediction 170 184 - -
Car03g02356 693 Gene3D - 1 60 IPR043017 -
Car03g02356 693 MobiDBLite consensus disorder prediction 146 160 - -
Car03g02356 693 CDD SET_SETDB-like 395 660 - -
Car03g02356 693 MobiDBLite consensus disorder prediction 95 132 - -
Car03g02356 693 Pfam Pre-SET motif 375 519 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02356 Car-Chr3 69476250 69482514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02356 373 683 Su(var)3-9 homologs AT1G73100 29.268 4.53e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car03g02356 Pre-SET 9.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02356 - - cam:101500192 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02356 03 69476250 69482514 Car03g02356 03 69476250 69482514 ECH
Car04g00078 04 795067 804966 Car03g02356 03 69476250 69482514 PCT