Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02335 ATGGGTTTGAGAGACATAGGAGCTTCACTTCCTCCTGGATTTCGATTTTATCCAAGTGATGAGGAATTGGTTTGTCACTATCTTTACAAAAAGATTTCAAATGAGGAAGTTCTTAAGGGTACTTTGGTAGAAATTGATCTTCACATATGTGAACCATGGCAGCTTCCTGAGGTGGCAAAGCTGAATGCAAATGAATGGTATTTCTTTAGCTTTAGGGACAGAAAATATGCGACAGGGTTTAGAACAAACAGAGCAACAATATCTGGGTATTGGAAAGCAACGGGGAAGGATCGAACGGTGTTAGATCCAATGACGCAAGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTATAGGAACAGAGCTCCAAATGGTATCAAAACAGGGTGGATTATGCATGAATTTCGATTGGAGACACCACATATGCCTCCTAAGGAGGACTGGGTTTTGTGTAGAGTCTTTCacaaaagcaaagaagacaacaataacaataacaattccaaaatcaacacacaacaacTCATGTATGAGACAACACATCCATCCCTAACTTTGGCGTCATCATCTCCAACAAACCAAACCATGCCTAGTGTCTATAACCGAATTGATTCTTTTTCTTCCTCTATGACAACACTTCATCATTTAATTCCCAACCAAAACAATTCTTCCATGATGAATCTCCTTCATTATTCTCGTGATACAAATCCAAATAATAATAATAGCACTATTACTCAAATTAGTTCCAAAGGTGATCATGATGGATATGGATTCTTGTGGAACATGGATTTGGAAGAAAATAGCCTAGAAGATGGCGTGGCCTCAAACTTGGACGCGATAAGATTTGAGGTTGATAATAATAATATGGTCTTACtataa 876 0.3642 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKISNEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRTVLDPMTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNNNNNSKINTQQLMYETTHPSLTLASSSPTNQTMPSVYNRIDSFSSSMTTLHHLIPNQNNSSMMNLLHYSRDTNPNNNNSTITQISSKGDHDGYGFLWNMDLEENSLEDGVASNLDAIRFEVDNNNMVLL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02335 291 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Car03g02335 291 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 288 - -
Car03g02335 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 288 - -
Car03g02335 291 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Car03g02335 291 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Car03g02335 291 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02335 Car-Chr3 69257956 69264922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02335 6 159 NAC Transcription Factor Family AT1G56010 58.642 1.02e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car03g02335 NAM 6.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02335 - - gmx:100806284 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02335 03 69257956 69264922 Car03g02335 03 69257956 69264922 ECH
Car03g02335 03 69257956 69264922 Car04g00103 04 1019797 1025078 PCT