Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02334 ATGATGGAAGCAAACTATGAAAGTAATAGCTCCAAAATCAAGAAGATGGAACATGTTTCAGTTCCACCTGGTTTTGCATCCCTGACGTCTTTTTATTTGAAAAGGGATGAAAAGGTTAACAAAACGGATAAGTCTACAAACATCGTCCCAAATGAGATTTATACACATCGGCCGTGGATATTGCTGGACCAGAGCAGCAACCACAAGCCTCAGGAATCTCACAATGACCATCTTCCAATGGTTAAGTTGAATCCCCATACAAATTCTTCTCTTCCAAAAGGGACCGTATTTGGATGTCCAAACTGCAGTAATTGTATTAAGGTATTAGCGAGGTGGCATCCTGAGGATGTAAGAAGGGAAGATCTAGGAGAAGCTCCAATTTTTCATCCAACCGAAGAGGAATTCAAAGACACGCTTAAATATATCGCTAGCATACGTTCCAGAGCAGAACCTTATGGAATTTGCCGTATCATCCCTCCTACTAGCTGGAAACCGCCAAGTATTCTTGAAGGAAAAAATGTATGGGAAAACTCTGAATTTGTTGCTCAAATTCAGCGAATTGATGGGCACCAAGTTCAGCCTGCACCAGAAAATACAGCTATCTCTTATGATACTATAGAAACCAAGAGAAGAAAAGGGATGAAAGTAGCCATGGACTCTCATCTTGGTAATAGAAGCACTTGCACCCCTAATCAAGAGAATGTTCAAGAATGCGACTATGAACCTAAACCTGGTCCTAAATTCAGTCTCAAAACATTTAAGAAATTGGCAGATGAATTCAAGTTCCAGTACTTCAACTACAAGGATAAGAATAAGATTATGGGTTCTGATATAAATTCAGCTATACGCCAACAGCACTGGGAGCCATCTGTTGAGAATATTGAGGGTGAATACGGACGGATTGTTCAAAATCCAACTGAAGAAATCAAGGTTTTCTGTGGTAACACTTTGGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAACAGTTTCTGATCCTCCAGAGGCAAACACTTACCCTGAATATGTGAAATCTGGATGGAACTTAAATAATATGCTTTCAGTCCCAGGCTCTCTTCTTTCTTTTGAAAGCCCTGAAGCTGCACATAAATTTTCCCCTAGGGTACATGTGGGAATGTGCTTTTCTCCACTCAAATGGAAAGTTGAAGAGCACCGATTATACTCATTATGTTACATGCATTTGGGTGAACCCAAAGTATGGTATAGTGTCCCAGGAAGATTTGCTGTTAACTTCGAAACAGTTTGGAAGAAGTATATCCGAGATATGTATGCAGAACATCCTGATATGCATGATAATATGgttatGCAGTTATCCTGCTCAGTATTGAAGGAGGAGAGTATACCAGTATATCGTTGCGTTCAGCATCCTCGTGAATTTGTTCTTGTCTTCCCTGGAGCATATCACTCAGGTTTTGATTGTGGTTTCAACTGTTCTGAAGCAACAAGTTTTGCTCCTCTTGAGTGGCTGCCTCATGGACAGAATGTTGTAGAGCTACATTGTGAACAGAAGAGGAAGACATCAATTTCATATGATAAGCTGTTGCTGGGAGCAGCAAGGGAAGCTGTGAGGGCCCGATGGGAAACTGATATATGTATGAAGAGCACGCCAGACAATTTAACTTGTAAAGATGCCTATCAAAGAAGTGGGATCTTAACAAAAGTTTTGAGTTCTCGCATCATGAGTGAAAATTTGAAAAGGAAATTTATTTCCACTTCTTTGAAATCACAAAAGATGGATGAAAATTTTGATGTCAATTGTAAAAGGGAGTGTAGCATTTGTCTGCGTGATTTATTCCTGTCTGCTGTTGGTTGTTCGTGTTCAGATGACAAGTTTGCATGTATTGATCATGCAAAGCAGCTTTGTTCTTGCTCTTGGACAGAAAAAATTCTCCTCTGCCGTTATGAAATCAGTGAATTGGATGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTGCAGTCTATAAATGGGCCAAAGAGCATCTTGGTTTAACCGTGCGCTCAGTTGCCTCCAAGAGATCAAAACAAACCCCAGAAAAATTAATTGATTCACAAGACTTGATGAAAGAACCTATATTGCAGCCAGTGCGGGATGGATACTACAAGTGGAAACAGAGTAAGCCACAGGCTACATCAAATACTTCGGAAGGGAAACAAAATGAAACAGCCTTCCAAGTTAAGTGGAGTTCTAGTAGCATTCACAGTAGTTCTTATGGCATTCATTCAAAAAAGAACACAGCTTCACTTCATTCAGCAATTTCAAATGAGATCAAAGCTAAAGAGAAAATGGCGGGGCACCATTCTGCTGCAATAAACATTGGTGAAGGAAGTAATTCTGCTGAGATCAAACCTAATAGCAAGGCAATTGGGGATTTCACAATTTCAAAGAAAGTAGGTGACCCAAAAGTTTCTGATGTTTCAACTCCAAGCTCGCGTTTCTTGTCTTTTCTACAGGAAAATGTTTTGTTTGAAATTTCATCTGATAGTACAAGCTCATCTACTTCTTCAGAATCCGATGACGCTTGA 2547 0.3985 MMEANYESNSSKIKKMEHVSVPPGFASLTSFYLKRDEKVNKTDKSTNIVPNEIYTHRPWILLDQSSNHKPQESHNDHLPMVKLNPHTNSSLPKGTVFGCPNCSNCIKVLARWHPEDVRREDLGEAPIFHPTEEEFKDTLKYIASIRSRAEPYGICRIIPPTSWKPPSILEGKNVWENSEFVAQIQRIDGHQVQPAPENTAISYDTIETKRRKGMKVAMDSHLGNRSTCTPNQENVQECDYEPKPGPKFSLKTFKKLADEFKFQYFNYKDKNKIMGSDINSAIRQQHWEPSVENIEGEYGRIVQNPTEEIKVFCGNTLEAGDFSSGFPIPTVSDPPEANTYPEYVKSGWNLNNMLSVPGSLLSFESPEAAHKFSPRVHVGMCFSPLKWKVEEHRLYSLCYMHLGEPKVWYSVPGRFAVNFETVWKKYIRDMYAEHPDMHDNMVMQLSCSVLKEESIPVYRCVQHPREFVLVFPGAYHSGFDCGFNCSEATSFAPLEWLPHGQNVVELHCEQKRKTSISYDKLLLGAAREAVRARWETDICMKSTPDNLTCKDAYQRSGILTKVLSSRIMSENLKRKFISTSLKSQKMDENFDVNCKRECSICLRDLFLSAVGCSCSDDKFACIDHAKQLCSCSWTEKILLCRYEISELDVLHQALDGKLSAVYKWAKEHLGLTVRSVASKRSKQTPEKLIDSQDLMKEPILQPVRDGYYKWKQSKPQATSNTSEGKQNETAFQVKWSSSSIHSSSYGIHSKKNTASLHSAISNEIKAKEKMAGHHSAAINIGEGSNSAEIKPNSKAIGDFTISKKVGDPKVSDVSTPSSRFLSFLQENVLFEISSDSTSSSTSSESDDA 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02334 848 SUPERFAMILY Clavaminate synthase-like 244 534 - -
Car03g02334 848 Pfam JmjC domain, hydroxylase 376 491 IPR003347 -
Car03g02334 848 ProSiteProfiles JmjC domain profile. 345 508 IPR003347 -
Car03g02334 848 Pfam C5HC2 zinc finger 598 648 IPR004198 -
Car03g02334 848 PANTHER LYSINE-SPECIFIC DEMETHYLASE 69 749 - -
Car03g02334 848 SMART JmjN_1 124 165 IPR003349 -
Car03g02334 848 SMART cupin_9 345 508 IPR003347 -
Car03g02334 848 ProSiteProfiles JmjN domain profile. 125 166 IPR003349 -
Car03g02334 848 Gene3D Cupin 110 492 - -
Car03g02334 848 Pfam jmjN domain 126 159 IPR003349 -
Car03g02334 848 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 69 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02334 Car-Chr3 69245743 69251704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02334 20 678 JUMONJI Transcription Factor Family AT1G08620 45.918 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car03g02334 JmjC 1.5e-32 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02334 - - gmx:100804864 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02334 03 69245743 69251704 Car03g02334 03 69245743 69251704 ECH