Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02331 ATGGATATAACTTCAGCAAAATGTGTGGTCAACACCATTTCTCGATTCATTCATCTAGTTTCTTGCCAAACAGTGAAACTTATACCCCTTCAGAAGAACTATAATAATATGGTTGGTGTCTTAAAGTGTTTGAAACCAGTGCTTGATGATGTTGTGGATTACAAAATCCCTTTAGACAAAAATTTGTACAGAGAATGTGAAGAATTGAATATGCAGGTTAATGAAGCTATGGAGTTCATTGAAAAACGGAGCCCAAAGATGAGTAGGATCCACAATGTTCTTCTAAGTGGAAAAATGTTAATAAAGTTACAAAGCACTTCACTTATAATTTGTCACATAATTAATAGATCTTCAATGTCAACTTCCTCTTCCTCAGTTTTGGCTAATCTTCAGCACCATATGCAAGAACTTCAGAGTTTTAAGAAGGATTCAACAACACTCTATATAGAAGAAGCACTGAGAAATCAAAAGGATAATATTAAACCTTGCTATGAACATTTAAGGGAAATTATAGAGTTACTTAAATTGACATCAAGTCACGAGCTTCTAAAAGAAAGTATTGATGTTGAAAAGGAAAGGTTGAATGTGAATGCACAAGTCAACAAAACAAAAGAGGAGTTGGATGAAGTTAACCAAATTATGAATATTGTGTGCATTTTGCGCGATTATGCGACGAAATCTAAATGCCCTGAAGTCAAAAGTGGTGTCTCAATACCATCATACTTTCTATGCCCTTTATCACTGGAAATCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAGAGGGGGTCCATTCAAATGTGGCTTGATAATGAGCTGCTTATTTGTCCCAAAACTCACCAGAAACTTACTCATACAGATCTAATTCCCAATTCTACTGTTAAAGCTATGATAACAAATTGGTGTGAAGAAAATAACTTCAAACTTCCCAGTAACTCAAATCCTGGTAATTCGACAAAAATTTCAAACCCTTCCGATAATTTATTGCATCAAGATTTAGACCGTGTCAATAGCTTGGAATATTCTAGTAGCAATTCCAATTCAAAACCATCCATTCAAACTATAAATGCATTTGAGAATCAAAAGGGTGAAGACTCGTCCAGATTAAGCGGCGAATCAAACAGATGCCAGAATGGTGAGACAGAAAAGTTTAAGCAACAATACCTTGGTCCTTCACATAGTCACAGCAGAAGTACTGAATCATTTTCACGTTCTATTTCTACTAATGTTTTTCCTGCCTCTCCTGCATATAAAGAATTAGTGAATTTTCCATCGTTATCACGAGATAAGTTTCAAACCTCTGGATCAAAAAATACATCGACGGAGAATGAAATTAAGTGCaataacaataataataataTTGTTATCACTAGCCATTCAAATGTCGATGCTGATCCTGTTTCTGATAAATTAACCACCACATCTCATGTCAATAAGTTAATTAAAGATCTACAAAGTCAATCAAATGAAACACAAGCTATCGCCGCAGAAGAATTGCGCCTCCTTACCAAACATAACATGGACAACCGTATCATTGTAGCACAGTGTGGAGCTATCATGCATTTACTTCCACTGCTATATTCAGATATGAAGATAACACAAGAGCATGCTGTGACAGCTTTACTGAATCTATCGATTAACGAAGATAACAGGACTTTGATTATGGAAGCAGAGGCTATAGAAGGACTTATCAATGTTTTGAAGACAGGAAATAATGGCGCCAAAGAAAATTCAGCGGCGGCTTTATTCAGTCTGTCAGTACCAGAAAACAATAAGGCGAAAATCGGTTGTACGGGTGCAATAAAAGCTTTGGTGGAACTTCTAGCTTCTGGAACTCTAAGAGGGAAGAAAGATGCTGCAACTGCTTTATTTAACCTTTCAATATGTCACGAGAATAAAGCACGTATAGTTGAAGCTGGAGCAGTGAAGTTTTTGGTTATGTTATTGGACCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTCCAGAGGGTCGACTGGAAATTGTACGTGAAAGAGGAGTCCCTTTACTTGTTGAACTTGTGGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTTCATCCATTCTCTTGCAACTAAGCCTTCATAGCCGTAAATTTTGTACTCTTATTCTCCGTGAAGGAGCTGTTCCTCCTGTAGTTGCATTATCCCAATTTGGTACACTCAGAGCAAAGGAAAAGGCACAACAACTTCTTGTTCTTTTTCGTAATCAGCGTGATGGAGCACCAGGGAAGGGAAAATCATGA 2298 0.3712 MDITSAKCVVNTISRFIHLVSCQTVKLIPLQKNYNNMVGVLKCLKPVLDDVVDYKIPLDKNLYRECEELNMQVNEAMEFIEKRSPKMSRIHNVLLSGKMLIKLQSTSLIICHIINRSSMSTSSSSVLANLQHHMQELQSFKKDSTTLYIEEALRNQKDNIKPCYEHLREIIELLKLTSSHELLKESIDVEKERLNVNAQVNKTKEELDEVNQIMNIVCILRDYATKSKCPEVKSGVSIPSYFLCPLSLEIMLDPVIVASGQTYERGSIQMWLDNELLICPKTHQKLTHTDLIPNSTVKAMITNWCEENNFKLPSNSNPGNSTKISNPSDNLLHQDLDRVNSLEYSSSNSNSKPSIQTINAFENQKGEDSSRLSGESNRCQNGETEKFKQQYLGPSHSHSRSTESFSRSISTNVFPASPAYKELVNFPSLSRDKFQTSGSKNTSTENEIKCNNNNNNIVITSHSNVDADPVSDKLTTTSHVNKLIKDLQSQSNETQAIAAEELRLLTKHNMDNRIIVAQCGAIMHLLPLLYSDMKITQEHAVTALLNLSINEDNRTLIMEAEAIEGLINVLKTGNNGAKENSAAALFSLSVPENNKAKIGCTGAIKALVELLASGTLRGKKDAATALFNLSICHENKARIVEAGAVKFLVMLLDPADGMVDKAVALLANLSTIPEGRLEIVRERGVPLLVELVESGSQRGKENASSILLQLSLHSRKFCTLILREGAVPPVVALSQFGTLRAKEKAQQLLVLFRNQRDGAPGKGKS 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02331 765 Pfam U-box domain 238 308 IPR003613 GO:0004842|GO:0016567
Car03g02331 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 602 644 IPR000225 GO:0005515
Car03g02331 765 PANTHER U BOX DOMAIN-CONTAINING 6 760 - -
Car03g02331 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 312 IPR013083 -
Car03g02331 765 MobiDBLite consensus disorder prediction 385 405 - -
Car03g02331 765 CDD RING-Ubox_PUB 242 284 IPR045210 -
Car03g02331 765 Gene3D - 554 658 IPR011989 -
Car03g02331 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 643 684 IPR000225 GO:0005515
Car03g02331 765 ProSiteProfiles U-box domain profile. 237 311 IPR003613 GO:0004842|GO:0016567
Car03g02331 765 Coils Coil 63 83 - -
Car03g02331 765 MobiDBLite consensus disorder prediction 312 331 - -
Car03g02331 765 SMART arm_5 632 671 IPR000225 GO:0005515
Car03g02331 765 SMART arm_5 509 549 IPR000225 GO:0005515
Car03g02331 765 SMART arm_5 550 590 IPR000225 GO:0005515
Car03g02331 765 SMART arm_5 672 712 IPR000225 GO:0005515
Car03g02331 765 SMART arm_5 591 631 IPR000225 GO:0005515
Car03g02331 765 Pfam Armadillo/beta-catenin-like repeat 511 548 IPR000225 GO:0005515
Car03g02331 765 Gene3D - 461 553 IPR011989 -
Car03g02331 765 Gene3D - 659 749 IPR011989 -
Car03g02331 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Car03g02331 765 Coils Coil 193 213 - -
Car03g02331 765 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 6 760 - -
Car03g02331 765 SMART Ubox_2 241 304 IPR003613 GO:0004842|GO:0016567
Car03g02331 765 SUPERFAMILY ARM repeat 473 751 IPR016024 -
Car03g02331 765 SUPERFAMILY RING/U-box 236 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02331 Car-Chr3 69217698 69222575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02331 1 765 U-box Gene Family AT3G54790 49.612 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02331 - - mtr:MTR_7g097020 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02331 03 69217698 69222575 Car03g02331 03 69217698 69222575 ECH