Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02323 ATGGGAAGGGCTCCATGCTGTGAGAAAATGGGTTTGAAGAGAGGACCATGGACTCCAGAAGAAGATAAAATCCTCATCGACCACATAAACACTTATGGCCATTCCAATTGGCGTGCTCTGCCTAAACAAGCTGGGTTGTTAAGATGTGGAAAGAGTTGTAGATTGCGGTGGATAAACTATCTAAGGCCAGATATCAAACGAGGTAATTTCACCAAAGAAGAAGAGGATGAAATAATCAATTTGCATCAAATGTTGGGAAACAGATGGTCAGCTATTGCAGCAAGATTACCAGGCCGCACAGACAACGAGATAAAAAACATTTGGCACACCCACTTGAAGAAAAGGCTGCCACAAGCCCATAACAACATCCCAAAGAAAAACAAAAAACAAACCAAGTTGGACTTTGATTTGGACGCCTCCAAATCAGACCAAGACACCAAACAAGAACAAAATAATCACGATGACGATTATAGGCCACAATGTTCTAGTGACATGTCCTCCCataataataatagtagcattgctactaataataatcatGACGTGTTCATAAATAATAACGATGGTGTTGATTCGGCACAAAATAATCTTGCATTGGATGAAGATTTTTGGTCGGAAGTGTTGTCATCTGATAATTCTAATACTGAGACAAGTGGTCTTTTGGATAACATAATTGGTGCTGAAGATTCATTCTCTTCCATAGGGACTGAAGAAGGAGTCTTTAATTTTAGTAATTCATTGAATATATGTGAAGAAGACATGGACTTTTGGCACGATGTTTATGCGAGAGCTGAGGAAATAACGCTAGAATTATAA 816 0.3787 MGRAPCCEKMGLKRGPWTPEEDKILIDHINTYGHSNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTKEEEDEIINLHQMLGNRWSAIAARLPGRTDNEIKNIWHTHLKKRLPQAHNNIPKKNKKQTKLDFDLDASKSDQDTKQEQNNHDDDYRPQCSSDMSSHNNNSSIATNNNHDVFINNNDGVDSAQNNLALDEDFWSEVLSSDNSNTETSGLLDNIIGAEDSFSSIGTEEGVFNFSNSLNICEEDMDFWHDVYARAEEITLEL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02323 271 CDD SANT 69 112 IPR001005 -
Car03g02323 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car03g02323 271 CDD SANT 16 61 IPR001005 -
Car03g02323 271 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car03g02323 271 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car03g02323 271 Gene3D - 11 67 - -
Car03g02323 271 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Car03g02323 271 MobiDBLite consensus disorder prediction 162 180 - -
Car03g02323 271 SMART sant 66 114 IPR001005 -
Car03g02323 271 SMART sant 13 63 IPR001005 -
Car03g02323 271 Gene3D - 69 116 - -
Car03g02323 271 MobiDBLite consensus disorder prediction 139 180 - -
Car03g02323 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car03g02323 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car03g02323 271 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 265 - -
Car03g02323 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car03g02323 271 MobiDBLite consensus disorder prediction 139 161 - -
Car03g02323 271 PANTHER TRANSCRIPTION FACTOR MYB15 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02323 Car-Chr3 69184112 69186701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02323 1 268 MYB Transcription Factor Family AT2G31180 52.206 3.95e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g02323 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02323 K09422 - gmx:100775603 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02323 03 69184112 69186701 Car03g02323 03 69184112 69186701 ECH
Car03g02323 03 69184112 69186701 Car04g02588 04 49220831 49223026 PCT