Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02318 ATGGATTTTGATTCTCCTCTCTTCCAAAACCAAAACCAAAATTTTCTCTACTTCCCTGAAAATTCCTACGCTAGTAATTTCTCATGGGAATTAGAAGATTTCATTTTCTTCAATGATGACatcaacaacaatacccttacgaatgaatcaatatcattatcattatcaTCCAATGATGAATCCAACTCTTCAGGATCCATACTAAGCAATGAGTCACAAGAAGTGTCATCCAATAAAACAACATACACACAAGTGAAAGAGATACAAACATTAACAACAACAACAAAGGAAATGACCAAAAGGGTGTTTAGAGGAGTAAGAAGAAGGCCTTGGGGAAAATTTGCAGCTGAAATAAGAGATTCAACAAGAAAAGGTGTTAGAGTATGGATTGGAACATTTGATACAGCTGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTTTCAACAAGAGGGTCATTGGCAGTGTTGAATTTTCCAGAGGAAGTTGTCAAAGAATCACTCAAAGAATTGGCTACTAATTTTAAGCCTTTCGAAGAAGGTACTTCCCCTGTATTAGCACTCAAGAGAAAACACATCATGAGAAAAAAGTCAAATAAATTACCTACTAAAAACAAAATCATCAAGAGGGATATTGATCAAATTCAGATTCATATTGAGGACAAAACTAATTCACAAAATGTATTAGTGTTTGAAGATTTGGGTGCTGAATATCTTGAGCAACTATTGAGCTTGACTTCTTAG 744 0.3293 MDFDSPLFQNQNQNFLYFPENSYASNFSWELEDFIFFNDDINNNTLTNESISLSLSSNDESNSSGSILSNESQEVSSNKTTYTQVKEIQTLTTTTKEMTKRVFRGVRRRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVKESLKELATNFKPFEEGTSPVLALKRKHIMRKKSNKLPTKNKIIKRDIDQIQIHIEDKTNSQNVLVFEDLGAEYLEQLLSLTS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02318 247 SUPERFAMILY DNA-binding domain 102 161 IPR016177 GO:0003677
Car03g02318 247 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Car03g02318 247 PANTHER DNA-BINDING DOMAIN 21 244 IPR044808 GO:0003700|GO:0009873
Car03g02318 247 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Car03g02318 247 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Car03g02318 247 Gene3D AP2/ERF domain 102 162 IPR036955 GO:0003700|GO:0006355
Car03g02318 247 MobiDBLite consensus disorder prediction 55 81 - -
Car03g02318 247 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Car03g02318 247 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
Car03g02318 247 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 244 - -
Car03g02318 247 CDD AP2 103 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02318 Car-Chr3 69137410 69138367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02318 91 244 AP2-EREBP Transcription Factor Family AT3G23240 53.896 1.06e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car03g02318 AP2 1.4e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02318 03 69137410 69138367 Car03g02318 03 69137410 69138367 ECH
Car03g02318 03 69137410 69138367 Car04g00114 04 1141383 1143593 PCT