Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02316 ATGGAttcttattcttcttcttcttcAAATTCATTTGATATTTCATGGCAAGAATTGTTTTTGCTCAACAACATTAATTACTTCAATTTTTCATCCTCTTGTGTTGGTGAAATGGATCATTTACAAGAACTCAAATCCAATAATACTACATACAATGACCACGTAGAAGAAAAATATTCACAACCACCATCAAAAACCCTAAATCCACAACCACCATCATGCAAACGAGAGAAGAGGCTCTATAGAGGAGTGAGGACAAGGCCATGGGGAAAATTTGCGGCGGAGATAAGGGACACAACACGAAACGGCGTTCGTGTGTGGATCGGAACATTTGACACGGCCGAAGCCGCCGCTTTAGCCTATGATCAAGCAGCTTTCTTAACAAGAGGATATAGAGCTATCCTTAATTTCTCCGAGCATGTTGTGAAGGAATCACTTCAAAACATGAATTTTAAGACATTATTATTGAACCGTGGTTGTTCACCATTGTTGGAACTTAAACGAATGCATGTCATGAGAAAAAGATCTAAGACTTGTAGTAAAAAGAGTAAAAGGGATTCAAAGAGTGGGGTTTTGATGAATAGTGCTCAAAATGTGTTGGTGTTGGAAGATTTGGGACCTGAATATTTAGAACAACTTTTGATCAACTCCATTTCTCTTGAGGGTGTTGATAATCA 677 0.3708 MDSYSSSSSNSFDISWQELFLLNNINYFNFSSSCVGEMDHLQELKSNNTTYNDHVEEKYSQPPSKTLNPQPPSCKREKRLYRGVRTRPWGKFAAEIRDTTRNGVRVWIGTFDTAEAAALAYDQAAFLTRGYRAILNFSEHVVKESLQNMNFKTLLLNRGCSPLLELKRMHVMRKRSKTCSKKSKRDSKSGVLMNSAQNVLVLEDLGPEYLEQLLINSISLEGVDN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02316 225 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Car03g02316 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 218 - -
Car03g02316 225 Gene3D AP2/ERF domain 80 140 IPR036955 GO:0003700|GO:0006355
Car03g02316 225 MobiDBLite consensus disorder prediction 55 74 - -
Car03g02316 225 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Car03g02316 225 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Car03g02316 225 Pfam AP2 domain 81 126 IPR001471 GO:0003700|GO:0006355
Car03g02316 225 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
Car03g02316 225 PANTHER DNA-BINDING DOMAIN 24 218 IPR044808 GO:0003700|GO:0009873
Car03g02316 225 CDD AP2 81 140 IPR001471 GO:0003700|GO:0006355
Car03g02316 225 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02316 Car-Chr3 69113089 69113818 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02316 55 217 AP2-EREBP Transcription Factor Family AT3G23240 51.220 6.67e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car03g02316 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02316 K14516 - gmx:100818907 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02316 03 69113089 69113818 Car03g02316 03 69113089 69113818 ECH
Car03g02316 03 69113089 69113818 Car04g02583 04 49063142 49063917 PCT