Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02311 ATGGCACAAAACCAAACCCATCATCACCCACCACAACTTTCTTCAAACTATGCATTACCCATTTTTGCCATTCTTATTGTTTTTATACTTATCACCTACTTCATTCTTGTCACCAAATGCTGCTTAAAATTTCACCCTTTGAGATGGATTTCAATCCTTCCACCATCACAAGATGAAGACCCTTTCATAGCATTCTCTCCAACGATTCGAAACCGCGGCGGTGTCGACGAATCCATCATCCAAAAAATCCCAACTTTTCAATTCACAAAAGGTGATGGTGATGAATATGATCATCAAAGTGTAAAGGGGTGTGTGGTTTGTTTGAGTTCTTTTCAAGAACAAGATATGCTAAAAGTGCTTCCAAATTGCAGCCACTACTTTCATTTGGATTGTATTAACATTTGGCTTCAAACAAATTCCAATTGTCCTCTTTGTAGAACAAGCATTTCAGGTAACACACAAGTTCCAATGGAACATATCATAGCACCAAGTTCTTCTCCACAGGAGTCTCAGTTATTTTCTAACATGGGTAGTGATGAAGATTTTGTTGTCATTGAATTGTGGGGAGAAGGAGAACATGGTGGAACAACAGTGCCTCAGATTCAGCAAGAGAGTAGAAATGACTCTACAAAGATGGAAGAGAAGAAGAATGTGAATTTGAAACAGAAAAAGTGGAAGCGTGTTTCTTGTATAATGGATGATGAGTGTATTGATGTTAGAAGGAAAGATGATCAGTTTTGTGTTGAGACAATTAGAAGATCATTCTCATTAGATTCTGCAAATGATAGACAAGTTTACTTGGATGTTCAAGACATTATTCAACATAATCATAGGAGTCAAAATGAGGATTGTGATAGTAGTAGGGGTAGAAGATCTTTCTTTCCACTTTGTTATGGCAGGGGAATGGGATCAAAACCTGCATTACTTGCTCCACATAACAGGGTAAAATATTGA 954 0.3742 MAQNQTHHHPPQLSSNYALPIFAILIVFILITYFILVTKCCLKFHPLRWISILPPSQDEDPFIAFSPTIRNRGGVDESIIQKIPTFQFTKGDGDEYDHQSVKGCVVCLSSFQEQDMLKVLPNCSHYFHLDCINIWLQTNSNCPLCRTSISGNTQVPMEHIIAPSSSPQESQLFSNMGSDEDFVVIELWGEGEHGGTTVPQIQQESRNDSTKMEEKKNVNLKQKKWKRVSCIMDDECIDVRRKDDQFCVETIRRSFSLDSANDRQVYLDVQDIIQHNHRSQNEDCDSSRGRRSFFPLCYGRGMGSKPALLAPHNRVKY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02311 317 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Car03g02311 317 SUPERFAMILY RING/U-box 97 151 - -
Car03g02311 317 CDD RING-H2_PA-TM-RING 104 146 - -
Car03g02311 317 SMART ring_2 104 145 IPR001841 -
Car03g02311 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 151 IPR013083 -
Car03g02311 317 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 302 - -
Car03g02311 317 PANTHER RING-H2 FINGER PROTEIN ATL16 3 302 IPR044600 GO:0016567|GO:0016740
Car03g02311 317 Pfam Ring finger domain 104 146 IPR001841 -
Car03g02311 317 MobiDBLite consensus disorder prediction 193 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02311 Car-Chr3 69095924 69097214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02311 10 278 C3H Transcription Factor Family AT1G04360 39.344 5.70e-60 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02311 K19041 - gmx:100809883 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02311 03 69095924 69097214 Car03g02311 03 69095924 69097214 ECH
Car03g02311 03 69095924 69097214 Car04g02582 04 49005329 49006548 PCT
Car04g00118 04 1177526 1178795 Car03g02311 03 69095924 69097214 PCT