Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02303 ATGAAGAAAGGTGAGAGGTTTTTTGAGAACCAAGAAGACAAGGCTATGTTGGAATCTGTATTAGGTACTGAAGCTGTTACCTTTTTTAGCTCAGCTGTTTCCAAACATGTCTTTTCCGATGTTGTTGTTCCGCCTAATATGGATTTGGGTATCCACAAAAGGTTGTGTCATCTTGTTAAGGGTTCCAAGTGGAGTTACGCGATTTTGTGGCAGGTTGCAGGTTTGAAATCTGGTGGCTATGTATTGAAATATGGTGATGGACACTGTGAGGATCTTAAAGTGGATAAAAGGAATGAGAAGGATGGGGAGAAAGATGATTTCAGGAGGAAGGTTTTAGGGAAGCTTCATGCATGTTGGGGTGGATCTGACTCGATTGAGAATGTTTATAAGAAATTGGATAACGTCTCGGATTTGTATATGCTTTACTTGACCTCAGTGTATTATGTGTTTGGTTTTAATTCTCAGTATGGTCCTGGAAATTCTTTTAAGTGTGTTAAACCATCTTGGGCTGCTGACGCTGGTAGTTGTTCGAACCAGTATGAATCGAGGTCATTTCTGGCTAAATCGGCTGGTTTTCAAACTGTGGTTTTTGTACCTCTCAAGACCGGGGTTGTCGAGTTTGGTTCGATGGAGTTGATGCCTGAAGAGCAGGGTTTTTTGGATTTGGTCAGGACAACATTTGGGGAATCTAGTTCTGGACAGGCTAAGGTAGTACCCAAGATTTTTGGGCGTGAGTTAAGTCTGGGGGATGCAAAATCTCCGTCTATAACTATTAGTTTCTCGCCGAAGGTGGAAGATGAATCTGGTTTCACTTCTGACTCTTACGAAGTACATACGCTTGGGGCAAACCATGCTTATGGTAATTCTTCCAATGGGGGTGTAGGAGACAGTACTGAGGCAAAAATGTTCCCTCAGTTAGGTCAAATGGTTCCTGGGAACTTTACTTCTCAAGCAAGAGTTTCTTCTGCAGATTTGGGTAACGAAGAGTCTTCCTCGCCTCTTGCAGACGAGCGGAAGCCGAGAAAAAGAGGGAGAAAGCCTGCCAATGGACGAGAGGAACCGCTGAATCACGTTGAAGCCGAGAGGCAAAGACGGGAGAAGCTTAACCAGAGATTCTATGCCTTAAGAGCTGTTGTTCCCAACATTTCCAAAATGGACAAGGCTTCTTTGCTTGGCGATGCTATCACCCATATCACTGATCTCCAGAAGAAGATCAAGCTATTGGAAACCGAAAAAAACATGGTAAACAATAAGGGCCAGCAGTTGTCGTTTCAAGATATCGATTTTCAGGCTAGACAGGACGATGCGATTGTGAGAGTGAGCTGTCCCATGGATATTCACCCGGTTTCTGGAATTGTGAAAATATTCAGAGAGCATCAAATTGTAGCTCAAGAGGCCAATGTTTCAACTGCACAGGATAAGGTAATTCATACATTTTCCATCAGAACTCAAGGAGGTGAAGCAGCTGCTGTACAGTTGAAAGAAAAGCTTGAAGCATCGTTATCCAAAAATTAA 1515 0.4304 MKKGERFFENQEDKAMLESVLGTEAVTFFSSAVSKHVFSDVVVPPNMDLGIHKRLCHLVKGSKWSYAILWQVAGLKSGGYVLKYGDGHCEDLKVDKRNEKDGEKDDFRRKVLGKLHACWGGSDSIENVYKKLDNVSDLYMLYLTSVYYVFGFNSQYGPGNSFKCVKPSWAADAGSCSNQYESRSFLAKSAGFQTVVFVPLKTGVVEFGSMELMPEEQGFLDLVRTTFGESSSGQAKVVPKIFGRELSLGDAKSPSITISFSPKVEDESGFTSDSYEVHTLGANHAYGNSSNGGVGDSTEAKMFPQLGQMVPGNFTSQARVSSADLGNEESSSPLADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLLETEKNMVNNKGQQLSFQDIDFQARQDDAIVRVSCPMDIHPVSGIVKIFREHQIVAQEANVSTAQDKVIHTFSIRTQGGEAAAVQLKEKLEASLSKN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02303 504 Gene3D - 345 418 IPR036638 GO:0046983
Car03g02303 504 MobiDBLite consensus disorder prediction 319 363 - -
Car03g02303 504 MobiDBLite consensus disorder prediction 331 363 - -
Car03g02303 504 SMART finulus 358 407 IPR011598 GO:0046983
Car03g02303 504 Coils Coil 398 418 - -
Car03g02303 504 PANTHER TRANSCRIPTION FACTOR BHLH3 4 503 - -
Car03g02303 504 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 227 IPR025610 -
Car03g02303 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 424 IPR036638 GO:0046983
Car03g02303 504 PANTHER MYC 4 503 IPR045084 GO:0003700|GO:0006355
Car03g02303 504 CDD bHLH_AtAIB_like 349 412 - -
Car03g02303 504 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Car03g02303 504 CDD ACT_UUR-ACR-like 452 503 - -
Car03g02303 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02303 Car-Chr3 69001473 69003791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02303 4 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.826 3.10e-160 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g02303 bHLH-MYC_N 4.9e-37 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02303 - - gmx:100819968 687.567