Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02299 ATGGCGTCTGAAGACCCCACCGTTGCCGTCGAGCAACCCATTGCGGAGGAGCCGGCAGCCGTAGACACTCTACCTCCGGTGGTCAACGAATCGGACGAACCTGCAGCTAAACCCAAAAAGGCACCCAAGGAGCCCAAGCCCAGAAAGCCTGCTGCCCGGACCCCTCGAACTCACCCTCCTTATGAAGAGATGATCAAGGACGCGATCCTTACGCTTAAGGAGAAGAATGGTTCAAGCCAGTACGCGATTGCGAAGTTCCTTGAGGAGAAGCACAAGCAACTTCCATCGAACTTCAGGAAGATTCTGCTTGTTCAATCCAAGAAGCTTGTTGCTTCTGGAAAGCTCGTTAAGGTCAAAGGATCTTTCAAGTTACCGTCGGTTAAGTCTTCTGCTCCAAAGCCAGCGAAGAAGCCTGTTGCAGCTAAGCCCAAACCCAAAGCAAAGCCCgctgctaaatctaagccagcagctgccaagtctaaagctgctcctgctaaagccaaaccagcagcaacTAAGGCTAAGCCTGCTGCCAAGGCAAAGCCTGCAGCTAAGCCCGCAGTAAAACCCAAGCCCGCTGCAAATGCCAGGCCGCCAGTTGCCAAGGCTAGAGCTGCCCCTGTTGTTAAGGCTAAGCCTGCAGCAAAGGCTAAGCCCGCAGCTAAGCCCAAGGCCAAGCCTGCTGCAAAGCCCAAGGCTGCTGCCGCTGCTAAGGCGAAACCTGCAGCCAAGGCAAAGGCTGTGAAATCGCCTGCTAAGTCTTCTAGAACCTCGACGAGAACGTCTCCTGGGAGGAGAGCTGCTGCTCCGAAACCGGTGGCGGCGAAGAAGGCGACGACGCCGGTGAAGAAAGCTCCGGCGAGAGCTGCAGCGAAGGGGAAGACTGCGAAATCTCCGGCGAAGAAGACACCGGCGAAGAGGGGGGGAAGGAAATGA 936 0.5214 MASEDPTVAVEQPIAEEPAAVDTLPPVVNESDEPAAKPKKAPKEPKPRKPAARTPRTHPPYEEMIKDAILTLKEKNGSSQYAIAKFLEEKHKQLPSNFRKILLVQSKKLVASGKLVKVKGSFKLPSVKSSAPKPAKKPVAAKPKPKAKPAAKSKPAAAKSKAAPAKAKPAATKAKPAAKAKPAAKPAVKPKPAANARPPVAKARAAPVVKAKPAAKAKPAAKPKAKPAAKPKAAAAAKAKPAAKAKAVKSPAKSSRTSTRTSPGRRAAAPKPVAAKKATTPVKKAPARAAAKGKTAKSPAKKTPAKRGGRK 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02299 311 MobiDBLite consensus disorder prediction 121 311 - -
Car03g02299 311 PANTHER HISTONE H1 188 311 - -
Car03g02299 311 PANTHER HISTONE H1 2 206 - -
Car03g02299 311 Pfam linker histone H1 and H5 family 58 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car03g02299 311 MobiDBLite consensus disorder prediction 33 63 - -
Car03g02299 311 MobiDBLite consensus disorder prediction 1 63 - -
Car03g02299 311 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car03g02299 311 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car03g02299 311 PRINTS Histone H5 signature 113 137 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car03g02299 311 PRINTS Histone H5 signature 148 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car03g02299 311 PRINTS Histone H5 signature 187 204 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car03g02299 311 PRINTS Histone H5 signature 209 228 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car03g02299 311 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car03g02299 311 Gene3D - 53 136 IPR036388 -
Car03g02299 311 PANTHER HISTONE H1.1 2 206 - -
Car03g02299 311 PANTHER HISTONE H1.1 188 311 - -
Car03g02299 311 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car03g02299 311 SUPERFAMILY "Winged helix" DNA-binding domain 55 137 IPR036390 -
Car03g02299 311 CDD H15 55 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02299 Car-Chr3 68979697 68980729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02299 59 134 Single Myb Histone (SMH) Gene Family AT1G72740 36.709 3.68e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02299 K11275 - gmx:100795994 132.88