Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02298 ATGCCCATTGACACGTTTCCAATTCAGGCGGACTCTCCGGCGCCGTCCAATCACTCACGCTACGCCGAGCAGTTACCCAAACAGTCCCATTTCAGAGGTGTCCGAAAGCGTCCATGGGGCCGTTTTGCCGCCGAGATCCGCGATCCATGGAAGAAGACTCGCAAGTGGCTTGGCACCTTTGACACCGCCGAAGAAGCTGCCAGAGCCTATGACGAAGCCGCAAGGAACCTCCGTGGACCCAGAGCCAAGACCAACTTCTCTTACGTCGTCGCTCCCATTATTCATCAATTTCCTCCACCGGTTTATTTCATGTCCGGTGCGCCGGTGAGGTCGGAGTACAAAGGTTATAAGTTGGAGAATATTGTTGTGAGTAAGGAAGAGGAGAAGAAGCCGTTCTTGTTTGACCTGAACTTGCCGGCGCCGCTTCTTTGA 432 0.5394 MPIDTFPIQADSPAPSNHSRYAEQLPKQSHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDEAARNLRGPRAKTNFSYVVAPIIHQFPPPVYFMSGAPVRSEYKGYKLENIVVSKEEEKKPFLFDLNLPAPLL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02298 143 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 105 - -
Car03g02298 143 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Car03g02298 143 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Car03g02298 143 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Car03g02298 143 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Car03g02298 143 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Car03g02298 143 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Car03g02298 143 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 105 - -
Car03g02298 143 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Car03g02298 143 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02298 Car-Chr3 68952203 68952851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02298 27 86 AP2-EREBP Transcription Factor Family AT1G50640 86.667 6.98e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car03g02298 AP2 5.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02298 K09286 - gmx:100816599 187.193