Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02296 ATGTCGTCGAATCAAGTTGTGAAAGTAAAGAGAGAAACGATTGCAACATGCATGACTTGCCCACTCTGCAACAACTTGTTCAAACAAGCTACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGACAAAATTACAGATGAAGATTTGGAATGCTGTCCAGTATGCAACATTGATTTGGGTTGTGTTCCTCTTGAGAAACTAAGGCCTGACCACAGTAAGCAAGATGTAAGGTCCAAAATTTTCCCAATAAAGGGAAAAAAGGTTAAAGAACCTGAAGTTGTTGCCGCCTCAGTACCATTGCCAGCTAAAAGAAAGGAAAGATCACTTTCATCTTTGGTGGTCAACACACCAAGAGTATCTGCACAAACAACCATGACGGGAAGAAGAACAAAACCTACAAGAAAGGCTAGCAGTATGCGGTCTTCTAGTTTTTCCATTGAAAAGACAGTTAAAAAGGAGGAAGAAATATTGGATGATTGTCCCGAGAGTTCAAACTCACCGGAAACTTCAAATAAGTTTGGTCAAAACAATGGACAGCAGAGTGAGGGTAGTCAATCAACACCAAATAAAGAAACAGAAAACGGTGCTGAAACATGGGATGCAAAGTTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAGGTTGCAAGCAGGACTAAATCTTTCAAGTCGAATACGCAAGGGTCCGATGCTAAACCAGAACCTGTTCACGTAACTGAGAATAACTCTCAAGTGCAGAAAATAAAAAATAAGGAAAATAAACGCAAGGCAAAAGTCGATGATGAAAAGATTAGCCCTTTTCCGGTTTCTTCAGATACAGCAAAACCGAATAAATCACGCAGAGTACGTAGGAAAAAGGAACCTTTTGGAGAATCTGGCATATCACCCCAAGCTGTGGTGGATTCTACTAGCGATAAACTCTTTAAGAGTGGTCCAATTTGGTTCTCCTTAGTGGCTTCTGAAAACCAGGAAGGAGATGCACCCTTGCCACAAATTCCTGCAAGTTATGTGAGAATAAAGGATGGAAGTGTACCTGTCTCATTTATCCAGAAATACCTAGTGAAGAAACTAGATCTCACCAGTGAAGCTGAGATTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACACTGAGACTACATAATTTGGTTGAGTTGTGGCTTGATTCAACGGTGTCCACATCACACCGAATTCCAGCGATTATTGGGTCCTCGGCAAAAGATTTTGTCATGGTCCTGGCTTATGCTCGAAAGACTCCACACCCTTGA 1284 0.4097 MSSNQVVKVKRETIATCMTCPLCNNLFKQATTISECLHTFCRKCIYDKITDEDLECCPVCNIDLGCVPLEKLRPDHSKQDVRSKIFPIKGKKVKEPEVVAASVPLPAKRKERSLSSLVVNTPRVSAQTTMTGRRTKPTRKASSMRSSSFSIEKTVKKEEEILDDCPESSNSPETSNKFGQNNGQQSEGSQSTPNKETENGAETWDAKLDLWKPLNCLVEVASRTKSFKSNTQGSDAKPEPVHVTENNSQVQKIKNKENKRKAKVDDEKISPFPVSSDTAKPNKSRRVRRKKEPFGESGISPQAVVDSTSDKLFKSGPIWFSLVASENQEGDAPLPQIPASYVRIKDGSVPVSFIQKYLVKKLDLTSEAEIEIKCMGQPVLPTLRLHNLVELWLDSTVSTSHRIPAIIGSSAKDFVMVLAYARKTPHP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02296 427 MobiDBLite consensus disorder prediction 114 200 - -
Car03g02296 427 SMART ring_2 20 60 IPR001841 -
Car03g02296 427 MobiDBLite consensus disorder prediction 252 270 - -
Car03g02296 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 423 - -
Car03g02296 427 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Car03g02296 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 114 IPR013083 -
Car03g02296 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 423 IPR044807 GO:0004842
Car03g02296 427 SUPERFAMILY RING/U-box 14 77 - -
Car03g02296 427 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Car03g02296 427 MobiDBLite consensus disorder prediction 226 251 - -
Car03g02296 427 MobiDBLite consensus disorder prediction 114 150 - -
Car03g02296 427 MobiDBLite consensus disorder prediction 167 199 - -
Car03g02296 427 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Car03g02296 427 MobiDBLite consensus disorder prediction 226 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02296 Car-Chr3 68933730 68940548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02296 1 345 C3H Transcription Factor Family AT2G30580 52.722 5.59e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02296 K16277 - gmx:100793731 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02296 03 68933730 68940548 Car04g00147 04 1464061 1468376 PCT