Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02277 ATGTCAAGCAATCATAATCTACAATATGATGGTAGCTCAATTATCGTTGACATCACAAACACCTTCACCAAAGTCACTTCCAAATACACCAACAATGCAAAAAGAAGGTGGCGTTTTGCATACACAGCAATTTATTCTAGAAGGGTTATGCTTTCCCTTGCAAAAGAGGTCATATCAAGAAAAAATCACAATCGCTACACCAAAATCTTTCACACTGAGTCTTCAAGTTCAAGAACCACTGTTGATATAATTGAACCTTTAATTCCACAACATGGAACCAATCATTACTCTTTGGTTGGTGTTTCTGATGTTGATAAAGCCAAACTTGCTGACATGGTTAAAGACAAAAACTTGAAGTCCTTAAGTGAGTTTGGAGGAGTTGAAGGTGTTGCAAATGTTATTGGAACATTTCCAACAAAGGGAATCATTGGAAGTGAAGATGACATTTCGAAAAGGGTGGAGTTGTTTGGTTCGAACACCTACCAAAAGCCACCGCCAAAAGGGTTACTACACTTTGTTCTTGAAGCTTTGAATGATACTACGATCATCATACTTCTATTTTGCGCTGGCCTTTCACTTGGTTTTGGCATAAAAGAGCATGGACCAAGTGAAGGTTGGTATGAAGGAGGTAGTATAATTTTAGCAGTGTTTCTGGTTGTTGTAGTAAGTGCATTAAGCAACTTTAGACAAGAAAGACAGTTTGACAAATTGTCTAAGATAAGCAATAACATAAAAGTTGAAGTTCTGAGAAATGATAGGCCACAAAAGATATCTATATTTGATGTTGTTGTGGGAGATGTTGTGTCTCTGAAGATTGGTGATCAAATTCCAGCTGATGGAGTATTTTTAGCTGGTCATTCATTGCAAGTGGATGAATCTAGCATGACAGGTGAGAGCGATCATGTAGAAATCGAGTCTGTAAGAGCGCCTTTTTTGTTGTCCGGGGCCAAAGTTGTGGATGGATATGCTCAAATGCTTGTAACTTCTGTTGGAGCCAACACATCTTGGGGTCAAATGATGAATTCAATAACCCGAGACAGTAACGAAAGAACGCCTTTACAAGCTCGTCTCGACAAGTTAACCTCTTCGATCGGAAAGGTTGGACTTGCAGTAGCATTTCTTGTTCTTCTAGTGTTGCTTATTCGTTATTTCACTGGTAACACAGAAGATGAGAATGGGAATAAGGAGTTTCAAGGAACAAAAACTGATATTAACGATGTTTTAAATGCTGTTGTAAGAATTGTTGCAGTTGCTGTTACTATTGTTGTTGTGGCTATCCCTGAGGGTCTGCCATTGGCTGTGACACTAACATTAGCTTACTCTATGAAAAGAATGATGGGAGACAATGCTATGGTGAGGAAACTTTCTGCTTGTGAAACTATGGGATCAGCAACTGTTATATGTACTGATAAAACTGGTACTTTGACACTTAATGAAATGAGGGTGACCAAGTTTTGTCTTGGTCTTGAAAATTTTGTGATGGAAAGTTTTTCTAATGCAATGGCACCAAAGGTTCTTGAGTTATTCTATCAAGGGGTAGCCCTCAATACAACTGGTAGTGTGTATAAGCCTTCATCAGGATCTGTACCTGAGATTTCAGGTAGCCCAACAGAAAAAGCTATACTCTTGTGGGCGGTATCGGATTTAGGTATGGACATGGATGAAATGAAACAGAAACATAAAGTCCTTCATGTTGAAACATTTAACTCGGAGAAGAAACGGAGCGGTGTTGCGATAAGGAAGGAGAATGAGAACAAAATTGATGTGCATTGGAAAGGAGCTGCAGAGATGATACTTGCAATGTGTGATAACTATATTGATATTAACGGCGCAATGAAGTCCATTGATGAAGAAAGGAGTAAATTGGAGAAGATAATTCAAGGCATGGCTGCTAGTAGTCTACGATGTATAGCTTTTGCTCACATGGAGATTTCGGAAGATATTGATTATTTTATGAAAAAGGAGAATAAAACACATAAGATGCTGAGAGAAGATGGATTGACCTTGGTTGGAATTGTTGGCCTCAAGGATCCATGTAGATCAAACACTAGGCTAGCTGTGGAAACTTGCAAAGCTGCAGGAGTTGAAATTAAGATGATAACTGGGGATAACATATTCACTGCAAAGGCAATAGCAACAGAATGTGGAATATTAGATTCTAATAATGCTGGAGAAGTGGTGGAAGGTGTGGAATTCAGAAACTATACAGAAGAAGAGAGAATGGAGAAAGTTGATAAGATCCGAGTGATGGCGAGATCGTCCCCTTTGGACAAACTTTTGATGGTGCAATGCCTCAGAAAGAAAGGACATGTAGTTGCAGTCACAGGCGATGGCACAAACGATGCACCGGCTCTAAAAGAAGCTGATATTGGACTTTCTATGGGAATCCAAGGAACTGAAGTCGCCAAACAAAGTTCCGATATCGTCATCTTGGACGACAACTTCAATTCTGTTGCCACTGTTTTAAGATGGGGAAGATGTGTTTACAACAACATTCAAAAATTTATTCAGTTTCAACTAACAGTCAATGTTGCAGCACTTGTCATAAACTTTATAGCAGCAGTTTCTTCAGGAGATGTTCCTTTAACAACAGTTCAACTTCTTTGGGTGAATCTCATTATGGATACACTAGGTGCTTTGGCACTTGCAACAGAAAGGCCTACAAAGGAGTTAATGAGGAAAAAGCCGATCGGTCGAACCGAACCTCTTATCACAAAAATTATGTGGAGAAATCTTTTAGCTCAATCTTTATATCAGATTGCAGTTCTTCTTGTTCTTCAGTTCTATGGAAAGTCAATCTTCAATGTAAGTACAGAGGTAAAGAATACACTCATTTTTAATGCTTTTGTTCTGTGCCAAGTTTTCAATGAGTTCAACTCAAGAAGTATGGAGAAACTTTATGTATTTGAAGGCATTCTCAAAAACCATCTGTTTCTTGGAATTGTTGGGATTACTATTGTTCTACAAATCTTGATGGTGGAACTACTAAGGAAGTTTGCTGATACAGAGAGATTAACATGGGACCAATGGGGAATTTGTGTTGGAATTGCAATTGTTTCATGGCCACTTGCTTGCTTAATAAAGCTCATACCTGTATCAAATAATACACCTTCATTCACCTATACTAAGTGGGCAAAATTACTAGTCTTCAAGCTCAAGAAAGCTTTTTAA 3171 0.3851 MSSNHNLQYDGSSIIVDITNTFTKVTSKYTNNAKRRWRFAYTAIYSRRVMLSLAKEVISRKNHNRYTKIFHTESSSSRTTVDIIEPLIPQHGTNHYSLVGVSDVDKAKLADMVKDKNLKSLSEFGGVEGVANVIGTFPTKGIIGSEDDISKRVELFGSNTYQKPPPKGLLHFVLEALNDTTIIILLFCAGLSLGFGIKEHGPSEGWYEGGSIILAVFLVVVVSALSNFRQERQFDKLSKISNNIKVEVLRNDRPQKISIFDVVVGDVVSLKIGDQIPADGVFLAGHSLQVDESSMTGESDHVEIESVRAPFLLSGAKVVDGYAQMLVTSVGANTSWGQMMNSITRDSNERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNTEDENGNKEFQGTKTDINDVLNAVVRIVAVAVTIVVVAIPEGLPLAVTLTLAYSMKRMMGDNAMVRKLSACETMGSATVICTDKTGTLTLNEMRVTKFCLGLENFVMESFSNAMAPKVLELFYQGVALNTTGSVYKPSSGSVPEISGSPTEKAILLWAVSDLGMDMDEMKQKHKVLHVETFNSEKKRSGVAIRKENENKIDVHWKGAAEMILAMCDNYIDINGAMKSIDEERSKLEKIIQGMAASSLRCIAFAHMEISEDIDYFMKKENKTHKMLREDGLTLVGIVGLKDPCRSNTRLAVETCKAAGVEIKMITGDNIFTAKAIATECGILDSNNAGEVVEGVEFRNYTEEERMEKVDKIRVMARSSPLDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKQSSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMRKKPIGRTEPLITKIMWRNLLAQSLYQIAVLLVLQFYGKSIFNVSTEVKNTLIFNAFVLCQVFNEFNSRSMEKLYVFEGILKNHLFLGIVGITIVLQILMVELLRKFADTERLTWDQWGICVGIAIVSWPLACLIKLIPVSNNTPSFTYTKWAKLLVFKLKKAF 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02277 1056 SUPERFAMILY Calcium ATPase, transmembrane domain M 124 1032 IPR023298 -
Car03g02277 1056 Gene3D - 145 344 - -
Car03g02277 1056 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 475 675 IPR023299 GO:0000166
Car03g02277 1056 CDD P-type_ATPase_Ca_PMCA-like 149 908 - -
Car03g02277 1056 Pfam Cation transporting ATPase, C-terminus 860 1030 IPR006068 -
Car03g02277 1056 Gene3D - 175 1029 - -
Car03g02277 1056 SFLD C1.7: P-type atpase like 450 828 - -
Car03g02277 1056 Pfam E1-E2 ATPase 244 446 - -
Car03g02277 1056 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 109 1032 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Car03g02277 1056 Gene3D - 478 678 IPR023299 GO:0000166
Car03g02277 1056 Pfam haloacid dehalogenase-like hydrolase 466 789 - -
Car03g02277 1056 PANTHER CALCIUM-TRANSPORTING ATPASE 21 1026 - -
Car03g02277 1056 SUPERFAMILY HAD-like 466 880 IPR036412 -
Car03g02277 1056 PRINTS H+-transporting ATPase (proton pump) signature 622 640 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car03g02277 1056 PRINTS H+-transporting ATPase (proton pump) signature 775 791 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car03g02277 1056 PRINTS H+-transporting ATPase (proton pump) signature 807 832 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car03g02277 1056 Pfam Cation transporter/ATPase, N-terminus 125 192 IPR004014 -
Car03g02277 1056 PRINTS P-type cation-transporting ATPase superfamily signature 291 305 - -
Car03g02277 1056 PRINTS P-type cation-transporting ATPase superfamily signature 468 482 - -
Car03g02277 1056 PRINTS P-type cation-transporting ATPase superfamily signature 671 682 - -
Car03g02277 1056 PRINTS P-type cation-transporting ATPase superfamily signature 693 703 - -
Car03g02277 1056 PRINTS P-type cation-transporting ATPase superfamily signature 775 794 - -
Car03g02277 1056 PRINTS P-type cation-transporting ATPase superfamily signature 799 811 - -
Car03g02277 1056 PANTHER CATION TRANSPORTING ATPASE 21 1026 - -
Car03g02277 1056 SUPERFAMILY Calcium ATPase, transduction domain A 243 342 IPR008250 -
Car03g02277 1056 SFLD p-type atpase 450 828 IPR044492 -
Car03g02277 1056 Gene3D - 465 820 IPR023214 -
Car03g02277 1056 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 746 855 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car03g02277 1056 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 212 385 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car03g02277 1056 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 411 500 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car03g02277 1056 ProSitePatterns E1-E2 ATPases phosphorylation site. 470 476 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02277 Car-Chr3 68767534 68771247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02277 33 1043 Primary Pumps ATPases AT3G63380 69.557 0.0 1343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02277 K01537 - gmx:100790034 1615.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02277 03 68767534 68771247 Car04g02439 04 43135473 43136444 PCT