Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02274 ATGAACTATTTGTATCCAGTGAAAGAAGAGTATTTGGAAGTTGAAGGAGGAAGTGATGAGGGAACAATGGTTGCTATTCCTAggccaatggaggggttacatgaagtgggaccaccaccatttctaaccaagacttttgatgctgtggaggaccccacaacttgtcacatagtttcatggagcagaggaggttctagctttgttgtttgggatccaaatgctttctcaagagaccttcttcctagatacttcaaacacaacaatttctcgagttttgttagacaactaaacacttatGGATTTAGAAAAATTGATCCTGATAGGTGGGAATTTGCAAATGAAGGATTTCTAAGAGGGCATAAACAACTTTTAGCAAACATAAAGAGAAGGAGACAAATTTCACAACCTAGTACTTCTCAACAATCATCACAAGGTCATTGTGTTGAAGTTGGAAATTTCGGTTTAGACGAAGAAATCGATCATTTGAGACGCGACAAACAAGTGTTGATGATGGAACTTGTGAAGCTTAGACAGCAACAACAGAACACAAGATCTTATCTACAAGCAATGGAAGAAAGACTACGTGGAATAGAAATCAAACAGCAACAAATGATGGCTTTTCTAGCTAGAGCTATGAAAAATCCAGCTTTTATTCAGCAACTAGTTCAACAGAAGGAAAAGAGGAAAGAGATTGAAGAAGCTATTACTAAGAAGAGGAGAAGACCAATTGAGTATGGAACAAGTTATGTTGGAGAATCAAGCATTGGTGGTGAATATGGAAGGAATTGTGTTAAATTTGGATTTGAAGTTTCAGAGTTGGAAGTTTTGGCAATGGAAATGCAGGGTCTTGGAAAGGGTAGGAGAGAAATTGAGGAAGAGAATGAGGTAGGTTTTGCAGCTGATGCTTGGACAAGAACCTGTGGAATCATAACTGAATCTTGCTTTTTGAATGAAGATCCTCTTGGTGGTTATAACCTTAAACTAAATCATGTGGATCAAAAAGAAGGGAAACAACACTTGTAG 1023 0.2942 MNYLYPVKEEYLEVEGGSDEGTMVAIPRPMEGLHEVGPPPFLTKTFDAVEDPTTCHIVSWSRGGSSFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHKQLLANIKRRRQISQPSTSQQSSQGHCVEVGNFGLDEEIDHLRRDKQVLMMELVKLRQQQQNTRSYLQAMEERLRGIEIKQQQMMAFLARAMKNPAFIQQLVQQKEKRKEIEEAITKKRRRPIEYGTSYVGESSIGGEYGRNCVKFGFEVSELEVLAMEMQGLGKGRREIEEENEVGFAADAWTRTCGIITESCFLNEDPLGGYNLKLNHVDQKEGKQHL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02274 340 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 22 293 - -
Car03g02274 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 293 IPR027725 -
Car03g02274 340 Coils Coil 159 193 - -
Car03g02274 340 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car03g02274 340 SUPERFAMILY "Winged helix" DNA-binding domain 37 130 IPR036390 -
Car03g02274 340 Coils Coil 221 241 - -
Car03g02274 340 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car03g02274 340 Gene3D - 34 131 IPR036388 -
Car03g02274 340 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car03g02274 340 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car03g02274 340 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car03g02274 340 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02274 Car-Chr3 68748204 68754744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02274 14 292 HSF AT3G22830 57.756 1.16e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car03g02274 HSF_DNA-bind 4.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02274 K09419 - gmx:100794264 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02274 03 68748204 68754744 Car04g00166 04 1697568 1699845 PCT