Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02261 ATGAAGTTGTCATCTCAAAGACAATCAGAGGACCCAAATTATGATATATGTGCCCTTTGTGGATATGGGGGAGATTTAATTTGCTGTGATAGTTGTCCTTCGTCTTTTCATCTAACTTGTTTAGATATGAAAGAGCTTCCATTGGGTGACTGGAACTGTGGTTACTGTTCGTGTCAATATTGTAGTAAAATTGAAAAAAGTGTAAAAAGATATACTAAAAATAATCCTAATGATGGATTGATCGTATGTCTATCATGTAGAAAAAGATATCACAAATCTTGTTGTGACATATACTCTTGTGAAACTGTGGATTCGGATTACCCATTTCTTTGTGGAAAAAGATGTCAACAGACATTGGAGAGACTTGAAATGCTTGTAGGGGTTAAACATGAAATTGGAAGTGGATATTTTTGCACTTTTGTTTCTAAATCACATTTGGGCTCGAGTGCTTCAAAAATGGAAAGTAGGGAGGTTAATTTGAAGCTGGTTGATGCATTATCAATAATGGATGAGTGCTTTAAACCAATTTTTATGGATGATAAAGGCAAGAATATTGAGATGATCCCTAGTATTCTATGTAGCCGTCGGTCAAACTCGCCTGCTGTGGACTATGGAGGATTTTTTACTGTACTTCTAGAAAATGAAGCTGAGACGATTAGTGTTGCTACTATCAGGATTCATGCACAAGGTCGGGCAGAGATGCCATTTATTGGGACACGTCTTACGTATCGAAATCAAGGAATGTGTCGCTTACTCCTCAATATCATTGAATTGACACTAAGCTATTTAAATGTTGAGATGTTGGTCATACCTTCGGCCTCGGAAGTTAAAGAAACGTGGATTTCTCGTTTTGGATTTGAGCCAATCGACAAAATCACGAAATTGCTAATGAGGAATAAGAATGCAGTGGCATTCCATGGAACAGATAGGTTGCAAAAAAGGATACAAAGACATAACTTTTGTGATACAAGCCTCAATTTTATTGAAGCTCTCAACATTGATGAGATCACAAAACAGAAAGTGGAAAGGCCAATTGTAAGTGAGTCACGTGTTAGTGTTATAACTGAAGCTGATGAGATTATCAGAAAGAACGATTGTGCTGAAAGCTCTTCAAACAGGAAGCGAAGAAGTTCATCCAAAACAGTAACAAATTCTGAAGATTGTGAATCTGAACAAGCATCTTCAAAGCGTGCTAAGCTTGGTTTGAAAGAAACTGCACAGGGCAATGTTGGTACTGATTCTATTTCTGGTGTGAAAACAAACGATAACTTCAACGGGAGCCGCAGACGGTACTGTATTCGATCCGAAAATAAACGTGATCTATGGAAAAGGATGTGTGTCAACCCATACTTGTAA 1356 0.3754 MKLSSQRQSEDPNYDICALCGYGGDLICCDSCPSSFHLTCLDMKELPLGDWNCGYCSCQYCSKIEKSVKRYTKNNPNDGLIVCLSCRKRYHKSCCDIYSCETVDSDYPFLCGKRCQQTLERLEMLVGVKHEIGSGYFCTFVSKSHLGSSASKMESREVNLKLVDALSIMDECFKPIFMDDKGKNIEMIPSILCSRRSNSPAVDYGGFFTVLLENEAETISVATIRIHAQGRAEMPFIGTRLTYRNQGMCRLLLNIIELTLSYLNVEMLVIPSASEVKETWISRFGFEPIDKITKLLMRNKNAVAFHGTDRLQKRIQRHNFCDTSLNFIEALNIDEITKQKVERPIVSESRVSVITEADEIIRKNDCAESSSNRKRRSSSKTVTNSEDCESEQASSKRAKLGLKETAQGNVGTDSISGVKTNDNFNGSRRRYCIRSENKRDLWKRMCVNPYL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02261 451 MobiDBLite consensus disorder prediction 366 382 - -
Car03g02261 451 SUPERFAMILY FYVE/PHD zinc finger 8 64 IPR011011 -
Car03g02261 451 MobiDBLite consensus disorder prediction 407 421 - -
Car03g02261 451 ProSiteProfiles Zinc finger PHD-type profile. 14 59 IPR019787 -
Car03g02261 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 79 IPR013083 -
Car03g02261 451 MobiDBLite consensus disorder prediction 366 421 - -
Car03g02261 451 PANTHER PHD FINGER PROTEIN 12 9 399 IPR042163 GO:0003714|GO:0045892
Car03g02261 451 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 9 399 - -
Car03g02261 451 SMART PHD_3 58 116 IPR001965 -
Car03g02261 451 SMART PHD_3 16 57 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02261 Car-Chr3 68599139 68604746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02261 9 315 PHD Transcription Factor Family AT4G14920 40.385 8.33e-78 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02261 - - cam:105851815 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02261 03 68599139 68604746 Car03g02261 03 68599139 68604746 ECH
Car03g02261 03 68599139 68604746 Car04g00188 04 1925824 1938859 PCT