LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car03g02261	ATGAAGTTGTCATCTCAAAGACAATCAGAGGACCCAAATTATGATATATGTGCCCTTTGTGGATATGGGGGAGATTTAATTTGCTGTGATAGTTGTCCTTCGTCTTTTCATCTAACTTGTTTAGATATGAAAGAGCTTCCATTGGGTGACTGGAACTGTGGTTACTGTTCGTGTCAATATTGTAGTAAAATTGAAAAAAGTGTAAAAAGATATACTAAAAATAATCCTAATGATGGATTGATCGTATGTCTATCATGTAGAAAAAGATATCACAAATCTTGTTGTGACATATACTCTTGTGAAACTGTGGATTCGGATTACCCATTTCTTTGTGGAAAAAGATGTCAACAGACATTGGAGAGACTTGAAATGCTTGTAGGGGTTAAACATGAAATTGGAAGTGGATATTTTTGCACTTTTGTTTCTAAATCACATTTGGGCTCGAGTGCTTCAAAAATGGAAAGTAGGGAGGTTAATTTGAAGCTGGTTGATGCATTATCAATAATGGATGAGTGCTTTAAACCAATTTTTATGGATGATAAAGGCAAGAATATTGAGATGATCCCTAGTATTCTATGTAGCCGTCGGTCAAACTCGCCTGCTGTGGACTATGGAGGATTTTTTACTGTACTTCTAGAAAATGAAGCTGAGACGATTAGTGTTGCTACTATCAGGATTCATGCACAAGGTCGGGCAGAGATGCCATTTATTGGGACACGTCTTACGTATCGAAATCAAGGAATGTGTCGCTTACTCCTCAATATCATTGAATTGACACTAAGCTATTTAAATGTTGAGATGTTGGTCATACCTTCGGCCTCGGAAGTTAAAGAAACGTGGATTTCTCGTTTTGGATTTGAGCCAATCGACAAAATCACGAAATTGCTAATGAGGAATAAGAATGCAGTGGCATTCCATGGAACAGATAGGTTGCAAAAAAGGATACAAAGACATAACTTTTGTGATACAAGCCTCAATTTTATTGAAGCTCTCAACATTGATGAGATCACAAAACAGAAAGTGGAAAGGCCAATTGTAAGTGAGTCACGTGTTAGTGTTATAACTGAAGCTGATGAGATTATCAGAAAGAACGATTGTGCTGAAAGCTCTTCAAACAGGAAGCGAAGAAGTTCATCCAAAACAGTAACAAATTCTGAAGATTGTGAATCTGAACAAGCATCTTCAAAGCGTGCTAAGCTTGGTTTGAAAGAAACTGCACAGGGCAATGTTGGTACTGATTCTATTTCTGGTGTGAAAACAAACGATAACTTCAACGGGAGCCGCAGACGGTACTGTATTCGATCCGAAAATAAACGTGATCTATGGAAAAGGATGTGTGTCAACCCATACTTGTAA	1356	0.3754	MKLSSQRQSEDPNYDICALCGYGGDLICCDSCPSSFHLTCLDMKELPLGDWNCGYCSCQYCSKIEKSVKRYTKNNPNDGLIVCLSCRKRYHKSCCDIYSCETVDSDYPFLCGKRCQQTLERLEMLVGVKHEIGSGYFCTFVSKSHLGSSASKMESREVNLKLVDALSIMDECFKPIFMDDKGKNIEMIPSILCSRRSNSPAVDYGGFFTVLLENEAETISVATIRIHAQGRAEMPFIGTRLTYRNQGMCRLLLNIIELTLSYLNVEMLVIPSASEVKETWISRFGFEPIDKITKLLMRNKNAVAFHGTDRLQKRIQRHNFCDTSLNFIEALNIDEITKQKVERPIVSESRVSVITEADEIIRKNDCAESSSNRKRRSSSKTVTNSEDCESEQASSKRAKLGLKETAQGNVGTDSISGVKTNDNFNGSRRRYCIRSENKRDLWKRMCVNPYL	451

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Car03g02261	451	MobiDBLite	consensus disorder prediction	366	382	-	-
Car03g02261	451	SUPERFAMILY	FYVE/PHD zinc finger	8	64	IPR011011	-
Car03g02261	451	MobiDBLite	consensus disorder prediction	407	421	-	-
Car03g02261	451	ProSiteProfiles	Zinc finger PHD-type profile.	14	59	IPR019787	-
Car03g02261	451	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	2	79	IPR013083	-
Car03g02261	451	MobiDBLite	consensus disorder prediction	366	421	-	-
Car03g02261	451	PANTHER	PHD FINGER PROTEIN 12	9	399	IPR042163	GO:0003714\|GO:0045892
Car03g02261	451	PANTHER	FINGER PROTEIN, PUTATIVE-RELATED	9	399	-	-
Car03g02261	451	SMART	PHD_3	58	116	IPR001965	-
Car03g02261	451	SMART	PHD_3	16	57	IPR001965	-

Showing 1 to 10 of 10 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car03g02261	Car-Chr3	68599139	68604746	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car03g02261	9	315	PHD Transcription Factor Family	AT4G14920	40.385	8.33e-78	260

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car03g02261	-		-	cam:105851815	502.286

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car03g02261	03	68599139	68604746	Car03g02261	03	68599139	68604746	ECH
	Car03g02261	03	68599139	68604746	Car04g00188	04	1925824	1938859	PCT

Showing 1 to 2 of 2 entries

Previous1Next