Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02248 ATGGATCAACGCCTCAAACGAACTTTGAAGAGAAAACTTGACTTGGATGAAAATGAAGGAACCGCCAAAATTCGTCATCTAGATCTTCCCGCCGATATTTCTCAAAAGATCAATCTCCTCAACTCCGCTTTTTCACCCTCTGATTCAGATCGTTCCTCCGCGAAGAGAGCCCTATTTGCACTTTCTGAATTCGCCAAAGACGATGAAATTGTGGATATTTTAGTTGATTGCGGTGCTGTTCCTGTTCTGACGAAGGTTCTGCAGACGGCAGGGACGGTGACTGGTGACTCTGATTGTGATGCCTTTACTTATCAATATGATGTGGAGAAAGAGTCTGCGTTCGTCCTTGGTCTCCTCTCTGTCAAACCAGAGTATCAACAACTCATTGTTGATGCTGGAGCCTTGACTTGTCTTGTAGATTTGTTAAAGAGACACAAAGCTCCTATAATTTCTCAAGCACTTTTTTCTGGTCTTCTTAGGAGAGTAGCTGATGCAATAACCAACCTTGCCCATGAAAATACAAACATCAAGACCCTTGTCAGGCTGGAAGGTGGCATCCCCCCTCTAGTTGAATTGCTCGAATTCAATGATACAAAGGTACAAAGAGCAGCTGCAGGTGCCTTGCGAACTCTTGCATTTCAAAATGCTGACAATAAAATTCAGATTGTTGGATGCAATGCGTTGCCTTCTCTTGTACTAATGCTTGGATCAGAGGATCCTACTATACATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCACCAGATATTAAGAGAGAGGTTCTTCAAGCTGGGGCTTTACAACCTGTTATTTGCTTACTAAGTTCCTGCTGTTTGGAAAGCCAAAGAGAAGCAGCACTTTTAATTGGTCAATTTGCTACAACAGATTCAGATTGCAAGATTCACATTGCCCAAAGAGGGGCTATACAACCCTTAATTGACATGCTTAAGTCACCAGATTTACAGATCAGGGAAATGTCTACTTTTGCACTTGGGAGGTTGGCGCAGGACTCACACAATCAAGCTGGTATTGCTTATAACGGAGGTATAGAGCCTCTGCTCAATCTTCTTGGATCAAAGAATGGCTCTGTTCAACACAATGCAGCTTTTGCTCTCTACGGTCTTGCTGATAATGAGGACAATGTTGCCGTTATTATTAAGGTTGGTGGTTTTCAACAACTGCAGTATGGACATTTCAATGCTCAACCCACTCAAGAGTGTGTAACAAAGACGTTAAAACGATTGGAAGAGAAGATGCAAGGGAGAGTACTGAAACACATGCTATATCTTATGCGCTTTGCAGAAAAGGGTGTTCAAAGATGTGTCGCTCTTGCTCTTGCGCATTTATGTTCCCCTAATGATCGTAAAACTATTTTCATTGAAAATAATGGATTAGAATCTCTGGTGGATCTTCTTGAATCTACAGACCTAAAGCAGAAGGGTGAAGCTTCAGCAGCGCTGTACAAATTGGCAACCAAGGACATATGTTCTCTTGTTGATCCTGCTCCTCCATCACCAACTCCCCAGGTATACTTGGGTGAGCAATACGTAAACAATCCTAAACTCTCTGATGTCACATTCATAGTTGAAGGCAAAAGCTTTTATGCTCATAAAGTTTGTTTAGTTTCTTCTGATATATTTCGTGCAATGTTTGACGGGGGTTATAGGGAAAAGGAAGCCAAAGATATAGAGATTCCAAATATTAAATGGGACGTCTTTGAGTTAATGATGAGATTTATATACACTGGAACAGTAGATGTAGATTTGAATGTTGCTGTGGACCTCCTTAAAGCTGCAGATCAATATCTTTTGGATGGTCTTAAGCGTATTTGTGAATATGTTATTTCTGAGGATATTTCTGTGGAAAATGTCTCCTTGATGTACGGGATGTCAGTCACTTTCAATGCTACATCGTTACGATATGCGTGCATACTCTTTGTCCTGCAAGAATTTGATAAATTGAGTTCCAAACCATGGTATTGCCGCTTTGTTCGTTGCATATTATCAGACATTCGCAAATTCTTCTCAACTTTTCTTACCAAGCCTGATTCCTTAGACTTTTAA 2073 0.41 MDQRLKRTLKRKLDLDENEGTAKIRHLDLPADISQKINLLNSAFSPSDSDRSSAKRALFALSEFAKDDEIVDILVDCGAVPVLTKVLQTAGTVTGDSDCDAFTYQYDVEKESAFVLGLLSVKPEYQQLIVDAGALTCLVDLLKRHKAPIISQALFSGLLRRVADAITNLAHENTNIKTLVRLEGGIPPLVELLEFNDTKVQRAAAGALRTLAFQNADNKIQIVGCNALPSLVLMLGSEDPTIHYEAVGVIGNLVHSSPDIKREVLQAGALQPVICLLSSCCLESQREAALLIGQFATTDSDCKIHIAQRGAIQPLIDMLKSPDLQIREMSTFALGRLAQDSHNQAGIAYNGGIEPLLNLLGSKNGSVQHNAAFALYGLADNEDNVAVIIKVGGFQQLQYGHFNAQPTQECVTKTLKRLEEKMQGRVLKHMLYLMRFAEKGVQRCVALALAHLCSPNDRKTIFIENNGLESLVDLLESTDLKQKGEASAALYKLATKDICSLVDPAPPSPTPQVYLGEQYVNNPKLSDVTFIVEGKSFYAHKVCLVSSDIFRAMFDGGYREKEAKDIEIPNIKWDVFELMMRFIYTGTVDVDLNVAVDLLKAADQYLLDGLKRICEYVISEDISVENVSLMYGMSVTFNATSLRYACILFVLQEFDKLSSKPWYCRFVRCILSDIRKFFSTFLTKPDSLDF 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02248 690 Gene3D - 157 280 IPR011989 -
Car03g02248 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 310 352 IPR000225 GO:0005515
Car03g02248 690 Gene3D Potassium Channel Kv1.1; Chain A 510 652 IPR011333 -
Car03g02248 690 ProSiteProfiles BTB domain profile. 526 592 IPR000210 GO:0005515
Car03g02248 690 Pfam Armadillo/beta-catenin-like repeat 299 338 IPR000225 GO:0005515
Car03g02248 690 Pfam Armadillo/beta-catenin-like repeat 183 212 IPR000225 GO:0005515
Car03g02248 690 Pfam Armadillo/beta-catenin-like repeat 215 254 IPR000225 GO:0005515
Car03g02248 690 SMART BTB_4 526 622 IPR000210 GO:0005515
Car03g02248 690 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 688 IPR044282 -
Car03g02248 690 SUPERFAMILY ARM repeat 423 497 IPR016024 -
Car03g02248 690 SUPERFAMILY ARM repeat 38 398 IPR016024 -
Car03g02248 690 SUPERFAMILY POZ domain 517 619 IPR011333 -
Car03g02248 690 SMART arm_5 340 380 IPR000225 GO:0005515
Car03g02248 690 SMART arm_5 299 339 IPR000225 GO:0005515
Car03g02248 690 SMART arm_5 173 213 IPR000225 GO:0005515
Car03g02248 690 SMART arm_5 122 171 IPR000225 GO:0005515
Car03g02248 690 SMART arm_5 257 297 IPR000225 GO:0005515
Car03g02248 690 SMART arm_5 455 495 IPR000225 GO:0005515
Car03g02248 690 SMART arm_5 215 255 IPR000225 GO:0005515
Car03g02248 690 SMART arm_5 67 121 IPR000225 GO:0005515
Car03g02248 690 Gene3D - 281 499 IPR011989 -
Car03g02248 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 184 IPR000225 GO:0005515
Car03g02248 690 Gene3D - 33 156 IPR011989 -
Car03g02248 690 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 3 688 - -
Car03g02248 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 351 393 IPR000225 GO:0005515
Car03g02248 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 184 219 IPR000225 GO:0005515
Car03g02248 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 226 268 IPR000225 GO:0005515
Car03g02248 690 Pfam BTB/POZ domain 518 620 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02248 Car-Chr3 68477589 68482842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02248 182 394 U-box Gene Family AT5G67340 29.108 1.61e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car03g02248 BTB 5.7e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02248 - - csin:114287792 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02248 03 68477589 68482842 Car03g02248 03 68477589 68482842 ECH