Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g02234 | ATGCGTACTAAGAAAGGCCAAAGTCGCCAATTTGCGTTTATTGGATTTCGTACAGACCAGGAAGCTCAGGAAGCGATTCGATATTTTAACAGATCTTACCTTGACACGCTTAGAATTACTTGTGAGGTGGCGCAAAAACTCGGTGACGCAAATCTTCCTCGTCCGTGGAGTCGGCATTCAACAAAAAAAGACAATAAAGTGACCACCCCGGATGTGAACAAACATGCTAGAGCTAAAGTAGAAGTAGCAGATTCTAAGGACATTGATGACCCGCAGCTTCAAGATTTTCTTCAGGTCATGCAACCTCGGGCGAAGTCAAAGCTGTGGGCAAATGATACATCAGATGTAGCCAATGATGGTAACAACCAAGAAATATTGAACAAGGAGAGCCAAAGTACATCAGTTGCAAACCATCCTAAGTTAGGTCAAAGTGGCTCACAAGTAGATGGAGTTCCAAATAAGCCTGAACAACCAAACAAGTCACGTGAGCTTGAACATAATGGAGTAATGTCTGATATGGATTATTTCAAGAGTAAAGTGACAACAGAGTGGTCTGATTCTGAAAGCAGTGATGACGAAAATGGCGATGACAACAGCGATTCGGAATGTGCTGACAAAGATAACCATAGTCATGCTAGTGAACATGAAGAAAATTGTGGTCATAACCCTTCTGAGAGAACCCTAAGAAATGATGCTCAAGAATTAGACCTTGAGGGCCAAGAAGGTACTTTTGGAGAGGATGTTGCCAATGATAAGCCTCAAGTGAATGCATCTGAGGAGGGGGGGAAATTATCAAAACCAGAAGATGAGAAAGGTGTTTCTGAGTTGTATCGACTGTTTGTTCGTAATCTGCCATATACGACCACTGAGGAGGAGCTGGAAGAGCATTTCAGTCAGTTTGGTAGTATCTCACAGGTTCATTTAGTTGTTGATAAGGATACAAAACGATCCAAAGGAATAGCTTATATTCATTTTTCAGCTCCAGAATTTGCAGCCAGGGCGCTCCAAGAGTCAGACAATTCAATCTTCCAGGGAAGACTATTGCATGTTATGCCGGCTATAGAAAGACCTACAAACAATAAAGATGTCTCCAAGGACCAAGGCTCTCAAAATCTCAAACAACGAAGAGAGGAAGAGAGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCTCTGATACTGTTGTGGAAAACATTGCTCGGAAATATGGTGTTAGTAAAAGTGATTTACTAGATCGAGAAGCTGACGATCTTGCTGTACGCATTGCTTTGGGAGAAACTCAAGTGATTTCAGAGACTAAAAATGCATTTAAAAAAGCTGGAGTGAATGTGGAGTCTTTGGAGGAGCTTGTGAAGGGTAAAGTTGATGGCGTGAAAAGAAGTAACCATGTACTTTTAGTTAAAAACTTGCCCTATGGTTCTACGGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATCCTCCCCTCGACAAAAACATTGGCCCTGGTTGTTTTCCTTGAACCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCAAATGTTCTTAACCCAAAACCAACATCTAACAATAATGAGATGAATAGTGGAATTGGTGAAGCGGATGTAAAGCGACAGATATTGGAGCAAGACGTGGAAAGAATAACAGATGTGGATATTGATCCGGACAGAATAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACAACAGATGAGAGTTTGAAGAAACATTTCAGTGAGCACATGAAAGAGGGACGGATTTTGAGTGTCAAGGTGAAAAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTCGGATTTGTTGAGTTTGACTCCACAGAGACTGCTACAAATGTTTGTAGCGATTTACAGGGGACTGTTTTGGACAGTCATGCTCTTATTTTACAACTTTGTCATGTCAAGACTGATGGTAAAGTACAAAAGAGAGTTGAGAAAGACAAGAGTTCAACAAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACAATTGTTTAGCCCGTTTGGCCAGGTTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAATCATAGAGGTTTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTTACAGCACTCTCAAGCACCCATTTATATGGCAGACATTTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAGGAACTGCGGGCTCGAACTGCTGCTCAATTTAATGAACATAGTGGATTTCAAGATGCTACTACTTTCTCCAAGAAAAGGAAGGCCATCAATATCTTAGATGAAGGGAAAATGAAGTTTGAAAGGTTTGATGTTTAG | 2448 | 0.4118 | MRTKKGQSRQFAFIGFRTDQEAQEAIRYFNRSYLDTLRITCEVAQKLGDANLPRPWSRHSTKKDNKVTTPDVNKHARAKVEVADSKDIDDPQLQDFLQVMQPRAKSKLWANDTSDVANDGNNQEILNKESQSTSVANHPKLGQSGSQVDGVPNKPEQPNKSRELEHNGVMSDMDYFKSKVTTEWSDSESSDDENGDDNSDSECADKDNHSHASEHEENCGHNPSERTLRNDAQELDLEGQEGTFGEDVANDKPQVNASEEGGKLSKPEDEKGVSELYRLFVRNLPYTTTEEELEEHFSQFGSISQVHLVVDKDTKRSKGIAYIHFSAPEFAARALQESDNSIFQGRLLHVMPAIERPTNNKDVSKDQGSQNLKQRREEERKAAEASGDTRAWNSLFMRSDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVISETKNAFKKAGVNVESLEELVKGKVDGVKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPSTKTLALVVFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSNVLNPKPTSNNNEMNSGIGEADVKRQILEQDVERITDVDIDPDRIEARSLFVKNLNFKTTDESLKKHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATNVCSDLQGTVLDSHALILQLCHVKTDGKVQKRVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQVKSLRLPMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGESLEELRARTAAQFNEHSGFQDATTFSKKRKAINILDEGKMKFERFDV | 815 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g02234 | 815 | CDD | RRM6_RBM19_RRM5_MRD1 | 690 | 764 | - | - | |
| Car03g02234 | 815 | MobiDBLite | consensus disorder prediction | 156 | 172 | - | - | |
| Car03g02234 | 815 | Gene3D | - | 247 | 390 | IPR012677 | - | |
| Car03g02234 | 815 | MobiDBLite | consensus disorder prediction | 368 | 386 | - | - | |
| Car03g02234 | 815 | SMART | rrm2_1 | 278 | 351 | IPR003954 | GO:0003676 | |
| Car03g02234 | 815 | SMART | rrm2_1 | 591 | 669 | IPR003954 | GO:0003676 | |
| Car03g02234 | 815 | MobiDBLite | consensus disorder prediction | 242 | 270 | - | - | |
| Car03g02234 | 815 | MobiDBLite | consensus disorder prediction | 201 | 226 | - | - | |
| Car03g02234 | 815 | PANTHER | RNA-BINDING PROTEIN 19-RELATED | 2 | 792 | - | - | |
| Car03g02234 | 815 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 53 | IPR035979 | GO:0003676 | |
| Car03g02234 | 815 | CDD | RRM4_RBM19_RRM3_MRD1 | 470 | 541 | - | - | |
| Car03g02234 | 815 | SUPERFAMILY | RNA-binding domain, RBD | 467 | 556 | IPR035979 | GO:0003676 | |
| Car03g02234 | 815 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 277 | 355 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | CDD | RRM3_RBM19_RRM2_MRD1 | 278 | 351 | - | - | |
| Car03g02234 | 815 | MobiDBLite | consensus disorder prediction | 130 | 154 | - | - | |
| Car03g02234 | 815 | Gene3D | - | 587 | 679 | IPR012677 | - | |
| Car03g02234 | 815 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 592 | 666 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 692 | 759 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 279 | 349 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 472 | 533 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | SUPERFAMILY | RNA-binding domain, RBD | 273 | 361 | IPR035979 | GO:0003676 | |
| Car03g02234 | 815 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 590 | 673 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | MobiDBLite | consensus disorder prediction | 51 | 86 | - | - | |
| Car03g02234 | 815 | MobiDBLite | consensus disorder prediction | 130 | 226 | - | - | |
| Car03g02234 | 815 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 470 | 542 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | Gene3D | - | 1 | 66 | IPR012677 | - | |
| Car03g02234 | 815 | CDD | RRM5_RBM19_like | 590 | 671 | IPR034423 | - | |
| Car03g02234 | 815 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 792 | - | - | |
| Car03g02234 | 815 | Gene3D | - | 463 | 564 | IPR012677 | - | |
| Car03g02234 | 815 | Gene3D | - | 681 | 789 | IPR012677 | - | |
| Car03g02234 | 815 | SMART | rrm1_1 | 278 | 351 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | SMART | rrm1_1 | 471 | 538 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | SMART | rrm1_1 | 691 | 762 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | SMART | rrm1_1 | 591 | 669 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | SUPERFAMILY | RNA-binding domain, RBD | 685 | 768 | IPR035979 | GO:0003676 | |
| Car03g02234 | 815 | MobiDBLite | consensus disorder prediction | 354 | 386 | - | - | |
| Car03g02234 | 815 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 690 | 766 | IPR000504 | GO:0003723 | |
| Car03g02234 | 815 | MobiDBLite | consensus disorder prediction | 56 | 86 | - | - | |
| Car03g02234 | 815 | SUPERFAMILY | RNA-binding domain, RBD | 580 | 675 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car03g02234 | Car-Chr3 | 68354902 | 68363748 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car03g02234 | 583 | 783 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 29.279 | 1.84e-14 | 75.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g02234 | K14787 | - | gmx:100798742 | 1163.67 |