Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02194 ATGGCTCCTGGAGGCAGTATTTTCAAAGAAGTTCTTGAATCTCATCTCTTGTCTTCAGATTATGAAACAGGCAAGGCTAAATCCGAGGCCAAGAGTAACAGTACACTTACAAAATCTACTAGTGTTGGGTTGAATGGAAAGAATGGAACTAGTTCGAAGAACGGCGTGCATGACTTACTCGGGTGCCCTGTCTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCCAATGGCCATACATTATGTTCAAATTGTAAGATTGAAGTCCACAATCTGTGCCCAACTTGTCACCATGATCTTGGGAATATAAGGTGCTTGGCTCTGGAGAAAGTGGCAGAATCTTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGTTGTAATGATATTTTCCCTTATTATGCTAAACTTAAGCACGAGCAAAATTGCGGATTTCGTCCATACAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGACATTCCAACTCTTGTTGCTCATCTCAAGGATGAACACAAGGTTGACATGCATGATGGATTCACCTTCAATCATCGATATGTCAAAACAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACCGTTTTCAATTGTTATGGAAGGTATTTCTGCTTGCACTTTGAGGCTTTCCAGCTAGGTACAGCTCCAGTTTTTATGGCTTTCTTACGGTTTATGGGCGATGACAACGAAGCAAAAAAATTCAGCTACAGCTTGGAAGTTGGCGCAAACGGGCGCAAACTTATATGGCAAGGAATTCCGAGGACCATTCGGGACAGTCATAGTAAAGTTAGAGATAGTCAAGATGGACTTATAATTCAGAGGAATCAAGCTCTTTATTTTTCTGGTGGGGATAAACAAGAGTTGAAGTTGAGAATCACCGGTCGTATATGGAAAGAAGATTGA 933 0.4202 MAPGGSIFKEVLESHLLSSDYETGKAKSEAKSNSTLTKSTSVGLNGKNGTSSKNGVHDLLGCPVCKNLMYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGRYFCLHFEAFQLGTAPVFMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRTIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02194 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 309 - -
Car03g02194 310 MobiDBLite consensus disorder prediction 28 49 - -
Car03g02194 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Car03g02194 310 MobiDBLite consensus disorder prediction 23 49 - -
Car03g02194 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 114 IPR013083 -
Car03g02194 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 309 - -
Car03g02194 310 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Car03g02194 310 SUPERFAMILY RING/U-box 55 104 - -
Car03g02194 310 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car03g02194 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 168 IPR013083 -
Car03g02194 310 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Car03g02194 310 SUPERFAMILY TRAF domain-like 115 307 - -
Car03g02194 310 CDD RING-HC_SIAHs 62 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02194 Car-Chr3 68025533 68027733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02194 1 310 C3H Transcription Factor Family AT2G41980 77.419 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02194 K04506 - gmx:100813966 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02194 03 68025533 68027733 Car03g02194 03 68025533 68027733 ECH