Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02186 ATGGAGCTAGCTTTGAGCTTAGGAGACACACCAAAACCCTTTTCTTTGTTTGAAAACCCAACAAAATTACCTAACAAAGATTCTTGCATACAACTTGAAGAAGCTGCTAAATCCTCAAACCAAAATAGAGGTTCCTCAGATTCTCCCATTCAGCTCGACCTTCTTCCTTCAACACCTGTTCTTCGTTCCCACCCTTCTCCACTCGTTCCAATCCCCTGGCTCAACGATGCACTGGGTATGGAACCGGCGAGGGTGTTGGATAACGACGAAGGAGAATCACCCAATAGTGGTGTGTCATGTTTTCAGATGGAATTCTGTATGATGAATGGTGCTGGAAGAAACAGTAGTCGTGAGGGGGGTGCGGATAGAAATAGTACTAGCGATGATGATGAAGAAGAAAATGGGTCCACTCGGAAGAAACTCAGACTCTCTAAGGATCAATCAGCTTTTCTTGAAGACACCTTCAAAGAACACACCACTCTCAATCCCAAACAGAAACTTGCTCTTGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTAAAGCAAACGGAAGTGGATTGTGAGTACTTAAAGAGATGTTGTGAGAGTCTAACAGAAGAGAATAGAAGGTTACAAAAGGAACTTCAAGAATTGAGAGCTTTGAAAACTTCTAAACCATTCTACATGCAACTTCCAGCTACCACACTCACTATGTGTCCTTCTTGTGAAAGGGTCGCCACCAACACCACCGGAACCGCCCTCACCAACAATAATAATGCTTCTCAACTCTCTCTTCGTAAGCCCACAATATTCTCATTACCTAATGGACAGGCCCACACGCAGCAGGCCCATTAA 873 0.4353 MELALSLGDTPKPFSLFENPTKLPNKDSCIQLEEAAKSSNQNRGSSDSPIQLDLLPSTPVLRSHPSPLVPIPWLNDALGMEPARVLDNDEGESPNSGVSCFQMEFCMMNGAGRNSSREGGADRNSTSDDDEEENGSTRKKLRLSKDQSAFLEDTFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRALKTSKPFYMQLPATTLTMCPSCERVATNTTGTALTNNNNASQLSLRKPTIFSLPNGQAHTQQAH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02186 290 PANTHER - 29 271 - -
Car03g02186 290 Gene3D - 142 192 - -
Car03g02186 290 CDD homeodomain 138 195 IPR001356 GO:0003677
Car03g02186 290 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Car03g02186 290 MobiDBLite consensus disorder prediction 21 53 - -
Car03g02186 290 SUPERFAMILY Homeodomain-like 128 195 IPR009057 -
Car03g02186 290 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Car03g02186 290 Coils Coil 200 230 - -
Car03g02186 290 MobiDBLite consensus disorder prediction 1 58 - -
Car03g02186 290 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Car03g02186 290 SMART HOX_1 136 198 IPR001356 GO:0003677
Car03g02186 290 CDD bZIP 187 226 - -
Car03g02186 290 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 29 271 - -
Car03g02186 290 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Car03g02186 290 Pfam Homeobox associated leucine zipper 194 228 IPR003106 GO:0006355|GO:0043565
Car03g02186 290 MobiDBLite consensus disorder prediction 111 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02186 Car-Chr3 67969592 67971313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02186 126 251 Homeobox Transcription Factor Family AT4G37790 78.571 3.44e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car03g02186 Homeodomain 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02186 K09338 - gmx:100776113 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02186 03 67969592 67971313 Car03g02186 03 67969592 67971313 ECH
Car03g02186 03 67969592 67971313 Car04g02151 04 28909401 28911593 PCT