Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02185 ATGGCAGAAGAAAATTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGACCCGGAACCGCCAATTGGGTCGATGAATAATGAAGCTTTGAACTTGGACGATTGGATTGAAGAACCTCTTCTGCGAATTAGCGAAGCTGCTGCGAGGCTTAGGGGGAGACAGAGATGGAGATGGAGGCAACTTCCAATCTCTCCCCCTTTTCCTCAAGTTCACCGCATTCTACCTCAACCCCCATATCCTCAGGTTCATCCAATTCTACCAGAACACGCACATCCAATTTATATCCCCCCTGAAGCTCGCAATATCTCTATTGAATTGAATAATTTTTTGGTCAATTCGGGCAATGGAATCACGTTACAGGCTGGGGAAGGAAGTGTGGCAGCTGTGGAGAGAATGGAGGAAGAGGAGGTGCTGCCGAAAGCATGTGAGAATAACAATGGTGTCATGGAGGATGAAACATCACAGAAGAAGGATGATGTTGAAAAGGGTAGTGGAAGTGATGGGGACTTTTTTGATTGTAATATCTGTTTGGACCTTGCCAAGGAGCCTGTTTTGACTTGTTGTGGTCATCTGTTTTGTTGGCAGTGCCTATATCGATGGCTGCATCTTCATTCAGATGCTAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGACGATTAAGAGTGTTACTCCTATATACGGCCGTGGAAACAATGTCCGTGTTCTTGAGGAGGATTCCTCTCTTAAAATCCCTCCTAGGCCACAAGCAAAGCGCGTTGAGAGTCTGAGACAAACGATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGATCTCACTAGGGATTTAGTTCAGCCAAATGAATCTGAAAATGCTCGTGGAACAGCAGAGAGAACTACTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGCGGAGAGAGCAGAATCCTGTGGCATCCCCGGATGATGTTGCGGGTTCAAATCAGAACAATGTTAATGGTGCTGAGTTGGGAGAGGATAACCGCAGGGTGCAATCCCTTTTGCTTCGAAGATCGCAATCACATAGAGCAACACTTTCTACTCTTTCATCAGCACTGACTTCTGCTGAAAGGTTGGTTGAGGCATATTTCCGTAGCAATCCATTAGGCAGAAACCAAGAACAACCACCTCCTTCAGTCGACGACAGAGATTCCTTTTCAAGCATTGCTGCTGTCATAAATTCAGAGAGTCAAGTGGACACGGCTGTAGAAATTGATTCCATGGTAACCTCTTCTAGGAGGAGAAGCGATGCTTCAAGATTGTCTGATGTCGACAGTGGAGATTCTCGTGCTCCAAGGCGCAGACGTCTGAACTGA 1368 0.462 MAEENSDAMNLDLNLGPDPEPPIGSMNNEALNLDDWIEEPLLRISEAAARLRGRQRWRWRQLPISPPFPQVHRILPQPPYPQVHPILPEHAHPIYIPPEARNISIELNNFLVNSGNGITLQAGEGSVAAVERMEEEEVLPKACENNNGVMEDETSQKKDDVEKGSGSDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKSVTPIYGRGNNVRVLEEDSSLKIPPRPQAKRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDLVQPNESENARGTAERTTSLLSRFLTSRGMRREQNPVASPDDVAGSNQNNVNGAELGEDNRRVQSLLLRRSQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPPSVDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRSDASRLSDVDSGDSRAPRRRRLN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02185 455 CDD RING-HC_AtRMA_like 172 216 - -
Car03g02185 455 Pfam Zinc finger, C3HC4 type (RING finger) 174 214 - -
Car03g02185 455 MobiDBLite consensus disorder prediction 313 343 - -
Car03g02185 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 243 IPR013083 -
Car03g02185 455 PANTHER OS01G0830200 PROTEIN 14 435 - -
Car03g02185 455 MobiDBLite consensus disorder prediction 424 455 - -
Car03g02185 455 MobiDBLite consensus disorder prediction 151 165 - -
Car03g02185 455 MobiDBLite consensus disorder prediction 325 340 - -
Car03g02185 455 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Car03g02185 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 435 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car03g02185 455 SUPERFAMILY RING/U-box 169 228 - -
Car03g02185 455 MobiDBLite consensus disorder prediction 146 165 - -
Car03g02185 455 SMART ring_2 174 214 IPR001841 -
Car03g02185 455 MobiDBLite consensus disorder prediction 427 455 - -
Car03g02185 455 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02185 Car-Chr3 67951093 67953450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02185 1 446 C3H Transcription Factor Family AT3G58030 52.802 1.18e-134 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02185 K10666 - gmx:100811099 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02185 03 67951093 67953450 Car03g02185 03 67951093 67953450 ECH