Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02170 ATGGATATGCGCAAGAGAGGAAGGTCTGAACACGGATTCAACAATGGAGGATTTAAGAAATCAAGACAAGAAATGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGATGCCCATTTGGCGAGAGCTGCCACTTCTTGCACTATGTTCCGGGCGGTTATAATGCTGTTGCCCAGATGATGAATCTAGCACCTGCAGCGCCTCCTGCTCCTAGAAATGTTGCCCCCCCACCACATGCTCCCAATGGGTCTGCACCATCTGCTGTTAAAAGCCGTATATGCAACAAGTTTAATACTGCAGAAGGCTGCAAATTTGGCGACAAATGCCATTTTGCTCACGGTGAATGGGAACTTGGGAAGCCTGTTGCTCCATCATTTGATGATCACCGTCCCATGGGACCCCCCAATGTAGGTCGTTTTGGTGGTCGAATGGAGCCTCCTCCTGGTCCCGCTGCCAGCTTTGGTGCCAATGCCACTGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCAATCATCGGTAAGGGTGGTGTGAACTCAAAACAGATCTGTCGCCAAACTGGAGCCAAACTTTCAATTCGAGATCATGAGTCTGACCCAAATCTTAGGAACATTGAACTTGAGGGAAATTTTGAACAAATTAAGGATGCAAGTAACATGGTGAAGGATTTACTGGTGACCCTGCAAATGTCTGCACCACCTAAATCAAACCAAGGTGCTCCTGGTGCCCCTGGCCATCATCATGGAAGCAACTTCAAAACAAAACTGTGTGAGAATTTTACAAAAGGATCTTGCACTTTTGGAGATAGATATAGCAACATTAGCTTTCCAATTTCAGTTTTCCCTTTTATTATTATGATTATATGCTCTCCTCATATTGCCGGAACACTGATCATAGAGTCTTGTCCTTCTCATCTCGGCGTTGCGGATAAATTTCCTTTTAGTTTCTCTTATGTCATCCTTTCCATAAAAGTGATTCATAGAATGTTTAAGGTTAAGCTAGATTCGCGGATTTTGTCCAAGGCCTATTATCATTTGAAACAACAAGAGGAAGGCCTATTATCATTTGAAACAACAAGAGGAAGGCCTATTATCATTTGA 1131 0.4421 MDMRKRGRSEHGFNNGGFKKSRQEMDSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAVAQMMNLAPAAPPAPRNVAPPPHAPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRPMGPPNVGRFGGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGNFEQIKDASNMVKDLLVTLQMSAPPKSNQGAPGAPGHHHGSNFKTKLCENFTKGSCTFGDRYSNISFPISVFPFIIMIICSPHIAGTLIIESCPSHLGVADKFPFSFSYVILSIKVIHRMFKVKLDSRILSKAYYHLKQQEEGLLSFETTRGRPIII 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02170 376 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 239 IPR036612 GO:0003723
Car03g02170 376 MobiDBLite consensus disorder prediction 1 35 - -
Car03g02170 376 CDD KH-I 169 232 - -
Car03g02170 376 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Car03g02170 376 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 11 281 - -
Car03g02170 376 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 11 281 - -
Car03g02170 376 SMART kh_6 166 236 IPR004087 GO:0003676
Car03g02170 376 MobiDBLite consensus disorder prediction 78 98 - -
Car03g02170 376 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Car03g02170 376 MobiDBLite consensus disorder prediction 20 35 - -
Car03g02170 376 Gene3D - 93 130 - -
Car03g02170 376 SMART c3hfinal6 100 125 IPR000571 GO:0046872
Car03g02170 376 SMART c3hfinal6 261 285 IPR000571 GO:0046872
Car03g02170 376 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Car03g02170 376 Pfam KH domain 170 232 IPR004088 GO:0003723
Car03g02170 376 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Car03g02170 376 MobiDBLite consensus disorder prediction 79 93 - -
Car03g02170 376 ProSiteProfiles Zinc finger C3H1-type profile. 261 280 IPR000571 GO:0046872
Car03g02170 376 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Car03g02170 376 MobiDBLite consensus disorder prediction 1 17 - -
Car03g02170 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Car03g02170 376 Gene3D K Homology domain, type 1 163 263 IPR036612 GO:0003723
Car03g02170 376 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02170 Car-Chr3 67861234 67864231 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car03g02170 KH_1 7.3e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02170 - - gmx:100803981 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02170 03 67861234 67864231 Car03g02170 03 67861234 67864231 ECH
Car03g02170 03 67861234 67864231 Car04g02161 04 29392920 29398337 PCT