Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02165 ATGAGTCAGGTTTGGAATCTAGGAACATGTAGTCAACAACAAAAACTATCCATAGTTGGAGAAGAAGAATCAAAGTCATCCAACACAAGCACTATTATGAGCCGTTTTGAGTCACCAACTTCAGCTTTTTATGCAACAGAAAACTATATGGGATTTGCAGAATTTGATAATCAATCTTTGAGTTCTCAATTATATAAGATTAATGATTTCGATTTCCCTTTGTATCAATCACTAAGAGAAAACAATCATTTCTTGGATTCATCAAACCAACATGATCCCAACTTTGAATTGTCAAACACTTTGCAAGCATTGGTGAAGTCTCAATTAAATGGTAATCAATGCCTTAGATTCCAAGAAAAATCCAATAAATTTTCATGTGAGAATTTTCCTGGGAGCAAGTTCATTCCAATTGAACAACAAAAGTTGTTCCTTGGTGGTCTTGCCTCAGTTGGCAGTAGCTCATCATTTTGTAACAAAGGAAATCAAAGCTATATGGATGCTTGTGGATCTTATGATTTATCTGTTGAGCAATTGAACTTCTCTTCTCATCATGAGAAATTGTCTCAAACAATTTCATCAGAAAGTTTATCAACTTCTCTTGGAAACCCTTCTTCTAATGAGAACGTAGTCTCAAGTAAAACAAGAATTAGATGGACAAAGGATCTTCATGAGAAGTTTGTTAAGTGTGTGAATCTCCTTGGGGGTGCAGAAAAGGCAACACCCAAAGCTGTATTAAAGATGATGGACTCTGATGGTTTGACCATATACCATGTAAAAAGTCATTTGCAAAAATATAGAATTGCAAAGTTCATGCCAGAGTCAACTCAAGGAAAATCTGACAAAAGAGTCCGTACAGAAGATATGGATCATATTGGTGTTAAAACTGGCTTTCAAATAAAGGAGGCCCTTCAATTGCAATTAGATGCACAAAGGCGTCTTCATGAACAACTAGAGATTCAAAGAACATTACAATTGCGAATTGAGGAACAAGGCAGAGAGCTGAAAAAAATGTTTGAGCAGCAGCAGAAGACATGTAATAACCTCTTCAAAACTCCAAATAAAGTTAATGATGATACAAAAATTAATCACTTAGAAGATGTTGAGGTTTCTATTTGTGAAGGGGCTGAAAATTCTTTATTCACTTCCAAAACCTCTCTGAACACATAA 1167 0.3513 MSQVWNLGTCSQQQKLSIVGEEESKSSNTSTIMSRFESPTSAFYATENYMGFAEFDNQSLSSQLYKINDFDFPLYQSLRENNHFLDSSNQHDPNFELSNTLQALVKSQLNGNQCLRFQEKSNKFSCENFPGSKFIPIEQQKLFLGGLASVGSSSSFCNKGNQSYMDACGSYDLSVEQLNFSSHHEKLSQTISSESLSTSLGNPSSNENVVSSKTRIRWTKDLHEKFVKCVNLLGGAEKATPKAVLKMMDSDGLTIYHVKSHLQKYRIAKFMPESTQGKSDKRVRTEDMDHIGVKTGFQIKEALQLQLDAQRRLHEQLEIQRTLQLRIEEQGRELKKMFEQQQKTCNNLFKTPNKVNDDTKINHLEDVEVSICEGAENSLFTSKTSLNT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02165 388 Pfam MYB-CC type transfactor, LHEQLE motif 298 344 IPR025756 -
Car03g02165 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 270 IPR017930 -
Car03g02165 388 Gene3D - 212 271 - -
Car03g02165 388 Pfam Myb-like DNA-binding domain 217 266 IPR001005 -
Car03g02165 388 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 24 385 IPR044848 GO:0003700
Car03g02165 388 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 268 IPR006447 GO:0003677
Car03g02165 388 Coils Coil 300 320 - -
Car03g02165 388 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 24 385 - -
Car03g02165 388 SUPERFAMILY Homeodomain-like 211 267 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02165 Car-Chr3 67818507 67821920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02165 210 347 G2-like Transcription Factor Family AT3G04450 55.634 1.92e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car03g02165 Myb_DNA-binding 2.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02165 - - cam:101504038 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02165 03 67818507 67821920 Car03g02165 03 67818507 67821920 ECH