Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02163 ATGGAGGATTTGAAGAAGAGAAAGCTAGAGGAAACGGGAAATGGTGAATTAATTTCCAAGGAAGATATTCGGCTTCTCATCGAACCTCTTGCTAAACCTCAGCTCGTTGATCTTCTCGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCGAGTGCTGATCCTGCCAATCGAAAGCTTTTTGTTCGTGGTTTGGCGTGGAATATCACTTCAGAAACTTTGCGAGCTGCATTTCAAGAGCATGGAGAAATTGAAGAAGGAGCTGTGATTTATGATAAAGTTACAGGAAAATCTCGTGGCTATGGATTTATCACTTACAAACATATGGAATCAGCTCAGAATGCATTGAGTGCACCTAGCAAGTTAATTGAAGGAAGATTGGCTGTATGTAATCTAGCTTGTGAGGGCCTAAGCGGAACAAGTAGTAGTGCTCCTGATCTTACCCTGAGAAAGCTTTATATTGGAAGCTTATCACCAGAAGTCACAAGTGAACTGCTTCTCAGCTATTTTGGGAAGCATGGTAGTATAGAGGAAGGTTCAGTTGCATATGACAAGGATTCAAATGAATCACGTGGATTTGGCTTTGTTACGTATAAGACAGCAGAGGCTGCAAAGAAGGCCATAGATGACCCAGAGAAGACTCTTGGGGGGAGATTAATAACAGTAAAATATGCTGATTCCCACAAGGGTAAATCTGGTCAAATGCCTTTTCCTGCAGGAGTAGTTCCAATGGCAGCCTTACCAATAACCCCAGGATACATGCAACCTGGAAAAATTCGTGTAAACTCTGGCACCGCAGTCGGTTATACGTACCCCCAAACTGCTGCACCGTATGCTGCAGCTCCTTATCCAAGTCTACTCACTGCACCTTCTTCTTATACAACACAAGGGCAGAGTCCTTATAATCCGGTTTCTGTGAAAAAAGACCAACGTGGGCTCCTGCAAACTCAATCTTTGGGAACAAACAGCTACCCTTATTACTATCCCAAGCAATGA 1014 0.428 MEDLKKRKLEETGNGELISKEDIRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPANRKLFVRGLAWNITSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFITYKHMESAQNALSAPSKLIEGRLAVCNLACEGLSGTSSSAPDLTLRKLYIGSLSPEVTSELLLSYFGKHGSIEEGSVAYDKDSNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRLITVKYADSHKGKSGQMPFPAGVVPMAALPITPGYMQPGKIRVNSGTAVGYTYPQTAAPYAAAPYPSLLTAPSSYTTQGQSPYNPVSVKKDQRGLLQTQSLGTNSYPYYYPKQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02163 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Car03g02163 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 226 IPR000504 GO:0003723
Car03g02163 337 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 337 - -
Car03g02163 337 SUPERFAMILY RNA-binding domain, RBD 57 140 IPR035979 GO:0003676
Car03g02163 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 233 IPR000504 GO:0003723
Car03g02163 337 CDD RRM_RBM24_RBM38_like 64 139 - -
Car03g02163 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Car03g02163 337 Gene3D - 43 142 IPR012677 -
Car03g02163 337 SUPERFAMILY RNA-binding domain, RBD 149 243 IPR035979 GO:0003676
Car03g02163 337 MobiDBLite consensus disorder prediction 297 337 - -
Car03g02163 337 SMART rrm1_1 65 137 IPR000504 GO:0003723
Car03g02163 337 SMART rrm1_1 157 229 IPR000504 GO:0003723
Car03g02163 337 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 15 337 - -
Car03g02163 337 Gene3D - 143 246 IPR012677 -
Car03g02163 337 MobiDBLite consensus disorder prediction 297 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02163 Car-Chr3 67800631 67804834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02163 148 240 C2H2 Transcription Factor Family AT2G19380 34.409 2.97e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02163 K12741 - gmx:100776344 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02163 03 67800631 67804834 Car03g02163 03 67800631 67804834 ECH